Biodata Module

HCC hosts multiple databases (BLAST, KEGG, PANTHER, InterProScan), genome files, short read aligned indices etc. on Crane.
In order to use these resources, the “biodata” module needs to be loaded first.
For how to load module, please check Module Commands.

Loading the “biodata” module will pre-set many environment variables, but most likely you will only need a subset of them. Environment variables can be used in your command or script by prefixing $ to the name.

The major environment variables are:
$DATA - main directory
$BLAST - Directory containing all available BLAST (nucleotide and protein) databases
$KEGG - KEGG database main entry point (requires license)
$PANTHER - PANTHER database main entry point (latest)
$IPR - InterProScan database main entry point (latest)
$GENOMES - Directory containing all available genomes (multiple sources, builds possible
$INDICES - Directory containing indices for bowtie, bowtie2, bwa for all available genomes
$UNIPROT - Directory containing latest release of full UniProt database

In order to check what genomes are available, you can type:

$ ls $GENOMES

In order to check what BLAST databases are available, you can just type:

$ ls $BLAST

An example of how to run Bowtie2 local alignment on Crane utilizing the default Horse, Equus caballus index (BOWTIE2_HORSE) with paired-end fasta files and 8 CPUs is shown below:

bowtie2_alignment.submit
#!/bin/sh
#SBATCH --job-name=Bowtie2
#SBATCH --nodes=1
#SBATCH --ntasks-per-node=8
#SBATCH --time=168:00:00
#SBATCH --mem=10gb
#SBATCH --output=Bowtie2.%J.out
#SBATCH --error=Bowtie2.%J.err

module load bowtie/2.2
module load biodata

bowtie2 -x $BOWTIE2_HORSE -f -1 input_reads_pair_1.fasta -2 input_reads_pair_2.fasta -S bowtie2_alignments.sam --local -p $SLURM_NTASKS_PER_NODE

An example of BLAST run against the non-redundant nucleotide database available on Crane is provided below:

blastn_alignment.submit
#!/bin/sh
#SBATCH --job-name=BlastN
#SBATCH --nodes=1
#SBATCH --ntasks-per-node=8
#SBATCH --time=168:00:00
#SBATCH --mem=10gb
#SBATCH --output=BlastN.%J.out
#SBATCH --error=BlastN.%J.err

module load blast/2.7
module load biodata
cp $BLAST/nt.* /scratch
cp input_reads.fasta /scratch

blastn -db /scratch/nt -query /scratch/input_reads.fasta -out /scratch/blast_nucleotide.results
cp /scratch/blast_nucleotide.results .

Available Organisms

The organisms and their appropriate environmental variables for all genomes and chromosome files, as well as indices are shown in the table below.

last generated 2019-09-15T23:19:37CDT

Short Section Scientific Source Build Type
ATH genomes Arabidopsis_thaliana NCBI TAIR10 Main Directory
GENOME_ATH genomes Arabidopsis_thaliana NCBI TAIR10 Genome Fasta File
CHR_ATH genomes Arabidopsis_thaliana NCBI TAIR10 Chromosome Fasta Files
BOWTIE_ATH bowtie Arabidopsis_thaliana NCBI TAIR10 Bowtie|Bowtie2 Index
BOWTIE2_ATH bowtie2 Arabidopsis_thaliana NCBI TAIR10 Bowtie|Bowtie2 Index
BWA_ATH bwa Arabidopsis_thaliana NCBI TAIR10 Bwa Index
PICARD_ATH genomes Arabidopsis_thaliana NCBI TAIR10 Picard .dict File
FAIDX_ATH genomes Arabidopsis_thaliana NCBI TAIR10 Fasta Index .fai File
ARABIDOPSIS_THALIANA_NCBI_TAIR10 genomes Arabidopsis_thaliana NCBI TAIR10 Main Directory
GENOME_ARABIDOPSIS_THALIANA_NCBI_TAIR10 genomes Arabidopsis_thaliana NCBI TAIR10 Genome Fasta File
CHR_ARABIDOPSIS_THALIANA_NCBI_TAIR10 genomes Arabidopsis_thaliana NCBI TAIR10 Chromosome Fasta Files
BOWTIE_ARABIDOPSIS_THALIANA_NCBI_TAIR10 bowtie Arabidopsis_thaliana NCBI TAIR10 Bowtie|Bowtie2 Index
BOWTIE2_ARABIDOPSIS_THALIANA_NCBI_TAIR10 bowtie2 Arabidopsis_thaliana NCBI TAIR10 Bowtie|Bowtie2 Index
BWA_ARABIDOPSIS_THALIANA_NCBI_TAIR10 bwa Arabidopsis_thaliana NCBI TAIR10 Bwa Index
PICARD_ARABIDOPSIS_THALIANA_NCBI_TAIR10 genomes Arabidopsis_thaliana NCBI TAIR10 Picard .dict File
FAIDX_ARABIDOPSIS_THALIANA_NCBI_TAIR10 genomes Arabidopsis_thaliana NCBI TAIR10 Fasta Index .fai File
BACILLUS_CEREUS_ATCC_10987 genomes Bacillus_cereus_ATCC_10987 NCBI 2004-02-13 Main Directory
GENOME_BACILLUS_CEREUS_ATCC_10987 genomes Bacillus_cereus_ATCC_10987 NCBI 2004-02-13 Genome Fasta File
CHR_BACILLUS_CEREUS_ATCC_10987 genomes Bacillus_cereus_ATCC_10987 NCBI 2004-02-13 Chromosome Fasta Files
BOWTIE_BACILLUS_CEREUS_ATCC_10987 bowtie Bacillus_cereus_ATCC_10987 NCBI 2004-02-13 Bowtie|Bowtie2 Index
BOWTIE2_BACILLUS_CEREUS_ATCC_10987 bowtie2 Bacillus_cereus_ATCC_10987 NCBI 2004-02-13 Bowtie|Bowtie2 Index
BWA_BACILLUS_CEREUS_ATCC_10987 bwa Bacillus_cereus_ATCC_10987 NCBI 2004-02-13 Bwa Index
PICARD_BACILLUS_CEREUS_ATCC_10987 genomes Bacillus_cereus_ATCC_10987 NCBI 2004-02-13 Picard .dict File
FAIDX_BACILLUS_CEREUS_ATCC_10987 genomes Bacillus_cereus_ATCC_10987 NCBI 2004-02-13 Fasta Index .fai File
BACILLUS_CEREUS_ATCC_10987_NCBI_2004_02_13 genomes Bacillus_cereus_ATCC_10987 NCBI 2004-02-13 Main Directory
GENOME_BACILLUS_CEREUS_ATCC_10987_NCBI_2004_02_13 genomes Bacillus_cereus_ATCC_10987 NCBI 2004-02-13 Genome Fasta File
CHR_BACILLUS_CEREUS_ATCC_10987_NCBI_2004_02_13 genomes Bacillus_cereus_ATCC_10987 NCBI 2004-02-13 Chromosome Fasta Files
BOWTIE_BACILLUS_CEREUS_ATCC_10987_NCBI_2004_02_13 bowtie Bacillus_cereus_ATCC_10987 NCBI 2004-02-13 Bowtie|Bowtie2 Index
BOWTIE2_BACILLUS_CEREUS_ATCC_10987_NCBI_2004_02_13 bowtie2 Bacillus_cereus_ATCC_10987 NCBI 2004-02-13 Bowtie|Bowtie2 Index
BWA_BACILLUS_CEREUS_ATCC_10987_NCBI_2004_02_13 bwa Bacillus_cereus_ATCC_10987 NCBI 2004-02-13 Bwa Index
PICARD_BACILLUS_CEREUS_ATCC_10987_NCBI_2004_02_13 genomes Bacillus_cereus_ATCC_10987 NCBI 2004-02-13 Picard .dict File
FAIDX_BACILLUS_CEREUS_ATCC_10987_NCBI_2004_02_13 genomes Bacillus_cereus_ATCC_10987 NCBI 2004-02-13 Fasta Index .fai File
BSUBT_168 genomes Bacillus_subtilis_168 Ensembl EB2 Main Directory
GENOME_BSUBT_168 genomes Bacillus_subtilis_168 Ensembl EB2 Genome Fasta File
CHR_BSUBT_168 genomes Bacillus_subtilis_168 Ensembl EB2 Chromosome Fasta Files
BOWTIE_BSUBT_168 bowtie Bacillus_subtilis_168 Ensembl EB2 Bowtie|Bowtie2 Index
BOWTIE2_BSUBT_168 bowtie2 Bacillus_subtilis_168 Ensembl EB2 Bowtie|Bowtie2 Index
BWA_BSUBT_168 bwa Bacillus_subtilis_168 Ensembl EB2 Bwa Index
PICARD_BSUBT_168 genomes Bacillus_subtilis_168 Ensembl EB2 Picard .dict File
FAIDX_BSUBT_168 genomes Bacillus_subtilis_168 Ensembl EB2 Fasta Index .fai File
BACILLUS_SUBTILIS_168_ENSEMBL_EB2 genomes Bacillus_subtilis_168 Ensembl EB2 Main Directory
GENOME_BACILLUS_SUBTILIS_168_ENSEMBL_EB2 genomes Bacillus_subtilis_168 Ensembl EB2 Genome Fasta File
CHR_BACILLUS_SUBTILIS_168_ENSEMBL_EB2 genomes Bacillus_subtilis_168 Ensembl EB2 Chromosome Fasta Files
BOWTIE_BACILLUS_SUBTILIS_168_ENSEMBL_EB2 bowtie Bacillus_subtilis_168 Ensembl EB2 Bowtie|Bowtie2 Index
BOWTIE2_BACILLUS_SUBTILIS_168_ENSEMBL_EB2 bowtie2 Bacillus_subtilis_168 Ensembl EB2 Bowtie|Bowtie2 Index
BWA_BACILLUS_SUBTILIS_168_ENSEMBL_EB2 bwa Bacillus_subtilis_168 Ensembl EB2 Bwa Index
PICARD_BACILLUS_SUBTILIS_168_ENSEMBL_EB2 genomes Bacillus_subtilis_168 Ensembl EB2 Picard .dict File
FAIDX_BACILLUS_SUBTILIS_168_ENSEMBL_EB2 genomes Bacillus_subtilis_168 Ensembl EB2 Fasta Index .fai File
BOS_TAURUS_ENSEMBL_UMD3_1 genomes Bos_taurus Ensembl UMD3.1 Main Directory
GENOME_BOS_TAURUS_ENSEMBL_UMD3_1 genomes Bos_taurus Ensembl UMD3.1 Genome Fasta File
CHR_BOS_TAURUS_ENSEMBL_UMD3_1 genomes Bos_taurus Ensembl UMD3.1 Chromosome Fasta Files
BOWTIE_BOS_TAURUS_ENSEMBL_UMD3_1 bowtie Bos_taurus Ensembl UMD3.1 Bowtie|Bowtie2 Index
BOWTIE2_BOS_TAURUS_ENSEMBL_UMD3_1 bowtie2 Bos_taurus Ensembl UMD3.1 Bowtie|Bowtie2 Index
BWA_BOS_TAURUS_ENSEMBL_UMD3_1 bwa Bos_taurus Ensembl UMD3.1 Bwa Index
PICARD_BOS_TAURUS_ENSEMBL_UMD3_1 genomes Bos_taurus Ensembl UMD3.1 Picard .dict File
FAIDX_BOS_TAURUS_ENSEMBL_UMD3_1 genomes Bos_taurus Ensembl UMD3.1 Fasta Index .fai File
BOS_TAURUS_ENSEMBL_UMD_3_1 genomes Bos_taurus Ensembl UMD_3.1 Main Directory
GENOME_BOS_TAURUS_ENSEMBL_UMD_3_1 genomes Bos_taurus Ensembl UMD_3.1 Genome Fasta File
CHR_BOS_TAURUS_ENSEMBL_UMD_3_1 genomes Bos_taurus Ensembl UMD_3.1 Chromosome Fasta Files
BOWTIE_BOS_TAURUS_ENSEMBL_UMD_3_1 bowtie Bos_taurus Ensembl UMD_3.1 Bowtie|Bowtie2 Index
BOWTIE2_BOS_TAURUS_ENSEMBL_UMD_3_1 bowtie2 Bos_taurus Ensembl UMD_3.1 Bowtie|Bowtie2 Index
BWA_BOS_TAURUS_ENSEMBL_UMD_3_1 bwa Bos_taurus Ensembl UMD_3.1 Bwa Index
PICARD_BOS_TAURUS_ENSEMBL_UMD_3_1 genomes Bos_taurus Ensembl UMD_3.1 Picard .dict File
FAIDX_BOS_TAURUS_ENSEMBL_UMD_3_1 genomes Bos_taurus Ensembl UMD_3.1 Fasta Index .fai File
BOS_TAURUS_NCBI_ARS_UCD1_2 genomes Bos_taurus NCBI ARS-UCD1.2 Main Directory
GENOME_BOS_TAURUS_NCBI_ARS_UCD1_2 genomes Bos_taurus NCBI ARS-UCD1.2 Genome Fasta File
CHR_BOS_TAURUS_NCBI_ARS_UCD1_2 genomes Bos_taurus NCBI ARS-UCD1.2 Chromosome Fasta Files
BOWTIE_BOS_TAURUS_NCBI_ARS_UCD1_2 bowtie Bos_taurus NCBI ARS-UCD1.2 Bowtie|Bowtie2 Index
BOWTIE2_BOS_TAURUS_NCBI_ARS_UCD1_2 bowtie2 Bos_taurus NCBI ARS-UCD1.2 Bowtie|Bowtie2 Index
BWA_BOS_TAURUS_NCBI_ARS_UCD1_2 bwa Bos_taurus NCBI ARS-UCD1.2 Bwa Index
PICARD_BOS_TAURUS_NCBI_ARS_UCD1_2 genomes Bos_taurus NCBI ARS-UCD1.2 Picard .dict File
FAIDX_BOS_TAURUS_NCBI_ARS_UCD1_2 genomes Bos_taurus NCBI ARS-UCD1.2 Fasta Index .fai File
COW genomes Bos_taurus NCBI UMD_3.1 Main Directory
GENOME_COW genomes Bos_taurus NCBI UMD_3.1 Genome Fasta File
CHR_COW genomes Bos_taurus NCBI UMD_3.1 Chromosome Fasta Files
BOWTIE_COW bowtie Bos_taurus NCBI UMD_3.1 Bowtie|Bowtie2 Index
BOWTIE2_COW bowtie2 Bos_taurus NCBI UMD_3.1 Bowtie|Bowtie2 Index
BWA_COW bwa Bos_taurus NCBI UMD_3.1 Bwa Index
PICARD_COW genomes Bos_taurus NCBI UMD_3.1 Picard .dict File
FAIDX_COW genomes Bos_taurus NCBI UMD_3.1 Fasta Index .fai File
BOS_TAURUS_NCBI_UMD_3_1 genomes Bos_taurus NCBI UMD_3.1 Main Directory
GENOME_BOS_TAURUS_NCBI_UMD_3_1 genomes Bos_taurus NCBI UMD_3.1 Genome Fasta File
CHR_BOS_TAURUS_NCBI_UMD_3_1 genomes Bos_taurus NCBI UMD_3.1 Chromosome Fasta Files
BOWTIE_BOS_TAURUS_NCBI_UMD_3_1 bowtie Bos_taurus NCBI UMD_3.1 Bowtie|Bowtie2 Index
BOWTIE2_BOS_TAURUS_NCBI_UMD_3_1 bowtie2 Bos_taurus NCBI UMD_3.1 Bowtie|Bowtie2 Index
BWA_BOS_TAURUS_NCBI_UMD_3_1 bwa Bos_taurus NCBI UMD_3.1 Bwa Index
PICARD_BOS_TAURUS_NCBI_UMD_3_1 genomes Bos_taurus NCBI UMD_3.1 Picard .dict File
FAIDX_BOS_TAURUS_NCBI_UMD_3_1 genomes Bos_taurus NCBI UMD_3.1 Fasta Index .fai File
BOS_TAURUS_NCBI_UMD_3_1_1 genomes Bos_taurus NCBI UMD_3.1.1 Main Directory
GENOME_BOS_TAURUS_NCBI_UMD_3_1_1 genomes Bos_taurus NCBI UMD_3.1.1 Genome Fasta File
CHR_BOS_TAURUS_NCBI_UMD_3_1_1 genomes Bos_taurus NCBI UMD_3.1.1 Chromosome Fasta Files
BOWTIE_BOS_TAURUS_NCBI_UMD_3_1_1 bowtie Bos_taurus NCBI UMD_3.1.1 Bowtie|Bowtie2 Index
BOWTIE2_BOS_TAURUS_NCBI_UMD_3_1_1 bowtie2 Bos_taurus NCBI UMD_3.1.1 Bowtie|Bowtie2 Index
BWA_BOS_TAURUS_NCBI_UMD_3_1_1 bwa Bos_taurus NCBI UMD_3.1.1 Bwa Index
PICARD_BOS_TAURUS_NCBI_UMD_3_1_1 genomes Bos_taurus NCBI UMD_3.1.1 Picard .dict File
FAIDX_BOS_TAURUS_NCBI_UMD_3_1_1 genomes Bos_taurus NCBI UMD_3.1.1 Fasta Index .fai File
CELEGANS genomes Caenorhabditis_elegans NCBI WS195 Main Directory
GENOME_CELEGANS genomes Caenorhabditis_elegans NCBI WS195 Genome Fasta File
CHR_CELEGANS genomes Caenorhabditis_elegans NCBI WS195 Chromosome Fasta Files
BOWTIE_CELEGANS bowtie Caenorhabditis_elegans NCBI WS195 Bowtie|Bowtie2 Index
BOWTIE2_CELEGANS bowtie2 Caenorhabditis_elegans NCBI WS195 Bowtie|Bowtie2 Index
BWA_CELEGANS bwa Caenorhabditis_elegans NCBI WS195 Bwa Index
PICARD_CELEGANS genomes Caenorhabditis_elegans NCBI WS195 Picard .dict File
FAIDX_CELEGANS genomes Caenorhabditis_elegans NCBI WS195 Fasta Index .fai File
CAENORHABDITIS_ELEGANS_NCBI_WS195 genomes Caenorhabditis_elegans NCBI WS195 Main Directory
GENOME_CAENORHABDITIS_ELEGANS_NCBI_WS195 genomes Caenorhabditis_elegans NCBI WS195 Genome Fasta File
CHR_CAENORHABDITIS_ELEGANS_NCBI_WS195 genomes Caenorhabditis_elegans NCBI WS195 Chromosome Fasta Files
BOWTIE_CAENORHABDITIS_ELEGANS_NCBI_WS195 bowtie Caenorhabditis_elegans NCBI WS195 Bowtie|Bowtie2 Index
BOWTIE2_CAENORHABDITIS_ELEGANS_NCBI_WS195 bowtie2 Caenorhabditis_elegans NCBI WS195 Bowtie|Bowtie2 Index
BWA_CAENORHABDITIS_ELEGANS_NCBI_WS195 bwa Caenorhabditis_elegans NCBI WS195 Bwa Index
PICARD_CAENORHABDITIS_ELEGANS_NCBI_WS195 genomes Caenorhabditis_elegans NCBI WS195 Picard .dict File
FAIDX_CAENORHABDITIS_ELEGANS_NCBI_WS195 genomes Caenorhabditis_elegans NCBI WS195 Fasta Index .fai File
DOG genomes Canis_familiaris NCBI build3.1 Main Directory
GENOME_DOG genomes Canis_familiaris NCBI build3.1 Genome Fasta File
CHR_DOG genomes Canis_familiaris NCBI build3.1 Chromosome Fasta Files
BOWTIE_DOG bowtie Canis_familiaris NCBI build3.1 Bowtie|Bowtie2 Index
BOWTIE2_DOG bowtie2 Canis_familiaris NCBI build3.1 Bowtie|Bowtie2 Index
BWA_DOG bwa Canis_familiaris NCBI build3.1 Bwa Index
PICARD_DOG genomes Canis_familiaris NCBI build3.1 Picard .dict File
FAIDX_DOG genomes Canis_familiaris NCBI build3.1 Fasta Index .fai File
CANIS_FAMILIARIS_NCBI_BUILD3_1 genomes Canis_familiaris NCBI build3.1 Main Directory
GENOME_CANIS_FAMILIARIS_NCBI_BUILD3_1 genomes Canis_familiaris NCBI build3.1 Genome Fasta File
CHR_CANIS_FAMILIARIS_NCBI_BUILD3_1 genomes Canis_familiaris NCBI build3.1 Chromosome Fasta Files
BOWTIE_CANIS_FAMILIARIS_NCBI_BUILD3_1 bowtie Canis_familiaris NCBI build3.1 Bowtie|Bowtie2 Index
BOWTIE2_CANIS_FAMILIARIS_NCBI_BUILD3_1 bowtie2 Canis_familiaris NCBI build3.1 Bowtie|Bowtie2 Index
BWA_CANIS_FAMILIARIS_NCBI_BUILD3_1 bwa Canis_familiaris NCBI build3.1 Bwa Index
PICARD_CANIS_FAMILIARIS_NCBI_BUILD3_1 genomes Canis_familiaris NCBI build3.1 Picard .dict File
FAIDX_CANIS_FAMILIARIS_NCBI_BUILD3_1 genomes Canis_familiaris NCBI build3.1 Fasta Index .fai File
DANIO_RERIO genomes Danio_rerio NCBI Zv9 Main Directory
GENOME_DANIO_RERIO genomes Danio_rerio NCBI Zv9 Genome Fasta File
CHR_DANIO_RERIO genomes Danio_rerio NCBI Zv9 Chromosome Fasta Files
BOWTIE_DANIO_RERIO bowtie Danio_rerio NCBI Zv9 Bowtie|Bowtie2 Index
BOWTIE2_DANIO_RERIO bowtie2 Danio_rerio NCBI Zv9 Bowtie|Bowtie2 Index
BWA_DANIO_RERIO bwa Danio_rerio NCBI Zv9 Bwa Index
PICARD_DANIO_RERIO genomes Danio_rerio NCBI Zv9 Picard .dict File
FAIDX_DANIO_RERIO genomes Danio_rerio NCBI Zv9 Fasta Index .fai File
DANIO_RERIO_NCBI_ZV9 genomes Danio_rerio NCBI Zv9 Main Directory
GENOME_DANIO_RERIO_NCBI_ZV9 genomes Danio_rerio NCBI Zv9 Genome Fasta File
CHR_DANIO_RERIO_NCBI_ZV9 genomes Danio_rerio NCBI Zv9 Chromosome Fasta Files
BOWTIE_DANIO_RERIO_NCBI_ZV9 bowtie Danio_rerio NCBI Zv9 Bowtie|Bowtie2 Index
BOWTIE2_DANIO_RERIO_NCBI_ZV9 bowtie2 Danio_rerio NCBI Zv9 Bowtie|Bowtie2 Index
BWA_DANIO_RERIO_NCBI_ZV9 bwa Danio_rerio NCBI Zv9 Bwa Index
PICARD_DANIO_RERIO_NCBI_ZV9 genomes Danio_rerio NCBI Zv9 Picard .dict File
FAIDX_DANIO_RERIO_NCBI_ZV9 genomes Danio_rerio NCBI Zv9 Fasta Index .fai File
DROSOPHILA_MELANOGASTER genomes Drosophila_melanogaster NCBI build5.41 Main Directory
GENOME_DROSOPHILA_MELANOGASTER genomes Drosophila_melanogaster NCBI build5.41 Genome Fasta File
CHR_DROSOPHILA_MELANOGASTER genomes Drosophila_melanogaster NCBI build5.41 Chromosome Fasta Files
BOWTIE_DROSOPHILA_MELANOGASTER bowtie Drosophila_melanogaster NCBI build5.41 Bowtie|Bowtie2 Index
BOWTIE2_DROSOPHILA_MELANOGASTER bowtie2 Drosophila_melanogaster NCBI build5.41 Bowtie|Bowtie2 Index
BWA_DROSOPHILA_MELANOGASTER bwa Drosophila_melanogaster NCBI build5.41 Bwa Index
PICARD_DROSOPHILA_MELANOGASTER genomes Drosophila_melanogaster NCBI build5.41 Picard .dict File
FAIDX_DROSOPHILA_MELANOGASTER genomes Drosophila_melanogaster NCBI build5.41 Fasta Index .fai File
DROSOPHILA_MELANOGASTER_NCBI_BUILD5_41 genomes Drosophila_melanogaster NCBI build5.41 Main Directory
GENOME_DROSOPHILA_MELANOGASTER_NCBI_BUILD5_41 genomes Drosophila_melanogaster NCBI build5.41 Genome Fasta File
CHR_DROSOPHILA_MELANOGASTER_NCBI_BUILD5_41 genomes Drosophila_melanogaster NCBI build5.41 Chromosome Fasta Files
BOWTIE_DROSOPHILA_MELANOGASTER_NCBI_BUILD5_41 bowtie Drosophila_melanogaster NCBI build5.41 Bowtie|Bowtie2 Index
BOWTIE2_DROSOPHILA_MELANOGASTER_NCBI_BUILD5_41 bowtie2 Drosophila_melanogaster NCBI build5.41 Bowtie|Bowtie2 Index
BWA_DROSOPHILA_MELANOGASTER_NCBI_BUILD5_41 bwa Drosophila_melanogaster NCBI build5.41 Bwa Index
PICARD_DROSOPHILA_MELANOGASTER_NCBI_BUILD5_41 genomes Drosophila_melanogaster NCBI build5.41 Picard .dict File
FAIDX_DROSOPHILA_MELANOGASTER_NCBI_BUILD5_41 genomes Drosophila_melanogaster NCBI build5.41 Fasta Index .fai File
ELAMBDA genomes Enterobacteriophage_lambda NCBI 1993-04-28 Main Directory
GENOME_ELAMBDA genomes Enterobacteriophage_lambda NCBI 1993-04-28 Genome Fasta File
CHR_ELAMBDA genomes Enterobacteriophage_lambda NCBI 1993-04-28 Chromosome Fasta Files
BOWTIE_ELAMBDA bowtie Enterobacteriophage_lambda NCBI 1993-04-28 Bowtie|Bowtie2 Index
BOWTIE2_ELAMBDA bowtie2 Enterobacteriophage_lambda NCBI 1993-04-28 Bowtie|Bowtie2 Index
BWA_ELAMBDA bwa Enterobacteriophage_lambda NCBI 1993-04-28 Bwa Index
PICARD_ELAMBDA genomes Enterobacteriophage_lambda NCBI 1993-04-28 Picard .dict File
FAIDX_ELAMBDA genomes Enterobacteriophage_lambda NCBI 1993-04-28 Fasta Index .fai File
ENTEROBACTERIOPHAGE_LAMBDA_NCBI_1993_04_28 genomes Enterobacteriophage_lambda NCBI 1993-04-28 Main Directory
GENOME_ENTEROBACTERIOPHAGE_LAMBDA_NCBI_1993_04_28 genomes Enterobacteriophage_lambda NCBI 1993-04-28 Genome Fasta File
CHR_ENTEROBACTERIOPHAGE_LAMBDA_NCBI_1993_04_28 genomes Enterobacteriophage_lambda NCBI 1993-04-28 Chromosome Fasta Files
BOWTIE_ENTEROBACTERIOPHAGE_LAMBDA_NCBI_1993_04_28 bowtie Enterobacteriophage_lambda NCBI 1993-04-28 Bowtie|Bowtie2 Index
BOWTIE2_ENTEROBACTERIOPHAGE_LAMBDA_NCBI_1993_04_28 bowtie2 Enterobacteriophage_lambda NCBI 1993-04-28 Bowtie|Bowtie2 Index
BWA_ENTEROBACTERIOPHAGE_LAMBDA_NCBI_1993_04_28 bwa Enterobacteriophage_lambda NCBI 1993-04-28 Bwa Index
PICARD_ENTEROBACTERIOPHAGE_LAMBDA_NCBI_1993_04_28 genomes Enterobacteriophage_lambda NCBI 1993-04-28 Picard .dict File
FAIDX_ENTEROBACTERIOPHAGE_LAMBDA_NCBI_1993_04_28 genomes Enterobacteriophage_lambda NCBI 1993-04-28 Fasta Index .fai File
EQUUS_CABALLUS_ENSEMBL_EQUCAB3_0 genomes Equus_caballus Ensembl EquCab3.0 Main Directory
GENOME_EQUUS_CABALLUS_ENSEMBL_EQUCAB3_0 genomes Equus_caballus Ensembl EquCab3.0 Genome Fasta File
CHR_EQUUS_CABALLUS_ENSEMBL_EQUCAB3_0 genomes Equus_caballus Ensembl EquCab3.0 Chromosome Fasta Files
BOWTIE_EQUUS_CABALLUS_ENSEMBL_EQUCAB3_0 bowtie Equus_caballus Ensembl EquCab3.0 Bowtie|Bowtie2 Index
BOWTIE2_EQUUS_CABALLUS_ENSEMBL_EQUCAB3_0 bowtie2 Equus_caballus Ensembl EquCab3.0 Bowtie|Bowtie2 Index
BWA_EQUUS_CABALLUS_ENSEMBL_EQUCAB3_0 bwa Equus_caballus Ensembl EquCab3.0 Bwa Index
PICARD_EQUUS_CABALLUS_ENSEMBL_EQUCAB3_0 genomes Equus_caballus Ensembl EquCab3.0 Picard .dict File
FAIDX_EQUUS_CABALLUS_ENSEMBL_EQUCAB3_0 genomes Equus_caballus Ensembl EquCab3.0 Fasta Index .fai File
HORSE genomes Equus_caballus NCBI EquCab2.0 Main Directory
GENOME_HORSE genomes Equus_caballus NCBI EquCab2.0 Genome Fasta File
CHR_HORSE genomes Equus_caballus NCBI EquCab2.0 Chromosome Fasta Files
BOWTIE_HORSE bowtie Equus_caballus NCBI EquCab2.0 Bowtie|Bowtie2 Index
BOWTIE2_HORSE bowtie2 Equus_caballus NCBI EquCab2.0 Bowtie|Bowtie2 Index
BWA_HORSE bwa Equus_caballus NCBI EquCab2.0 Bwa Index
PICARD_HORSE genomes Equus_caballus NCBI EquCab2.0 Picard .dict File
FAIDX_HORSE genomes Equus_caballus NCBI EquCab2.0 Fasta Index .fai File
EQUUS_CABALLUS_NCBI_EQUCAB2_0 genomes Equus_caballus NCBI EquCab2.0 Main Directory
GENOME_EQUUS_CABALLUS_NCBI_EQUCAB2_0 genomes Equus_caballus NCBI EquCab2.0 Genome Fasta File
CHR_EQUUS_CABALLUS_NCBI_EQUCAB2_0 genomes Equus_caballus NCBI EquCab2.0 Chromosome Fasta Files
BOWTIE_EQUUS_CABALLUS_NCBI_EQUCAB2_0 bowtie Equus_caballus NCBI EquCab2.0 Bowtie|Bowtie2 Index
BOWTIE2_EQUUS_CABALLUS_NCBI_EQUCAB2_0 bowtie2 Equus_caballus NCBI EquCab2.0 Bowtie|Bowtie2 Index
BWA_EQUUS_CABALLUS_NCBI_EQUCAB2_0 bwa Equus_caballus NCBI EquCab2.0 Bwa Index
PICARD_EQUUS_CABALLUS_NCBI_EQUCAB2_0 genomes Equus_caballus NCBI EquCab2.0 Picard .dict File
FAIDX_EQUUS_CABALLUS_NCBI_EQUCAB2_0 genomes Equus_caballus NCBI EquCab2.0 Fasta Index .fai File
EQUUS_CABALLUS_NCBI_EQUCAB3_0 genomes Equus_caballus NCBI EquCab3.0 Main Directory
GENOME_EQUUS_CABALLUS_NCBI_EQUCAB3_0 genomes Equus_caballus NCBI EquCab3.0 Genome Fasta File
CHR_EQUUS_CABALLUS_NCBI_EQUCAB3_0 genomes Equus_caballus NCBI EquCab3.0 Chromosome Fasta Files
BOWTIE_EQUUS_CABALLUS_NCBI_EQUCAB3_0 bowtie Equus_caballus NCBI EquCab3.0 Bowtie|Bowtie2 Index
BOWTIE2_EQUUS_CABALLUS_NCBI_EQUCAB3_0 bowtie2 Equus_caballus NCBI EquCab3.0 Bowtie|Bowtie2 Index
BWA_EQUUS_CABALLUS_NCBI_EQUCAB3_0 bwa Equus_caballus NCBI EquCab3.0 Bwa Index
PICARD_EQUUS_CABALLUS_NCBI_EQUCAB3_0 genomes Equus_caballus NCBI EquCab3.0 Picard .dict File
FAIDX_EQUUS_CABALLUS_NCBI_EQUCAB3_0 genomes Equus_caballus NCBI EquCab3.0 Fasta Index .fai File
ESCHERICHIA_COLI_K_12_DH10B genomes Escherichia_coli_K_12_DH10B NCBI 2008-03-17 Main Directory
GENOME_ESCHERICHIA_COLI_K_12_DH10B genomes Escherichia_coli_K_12_DH10B NCBI 2008-03-17 Genome Fasta File
CHR_ESCHERICHIA_COLI_K_12_DH10B genomes Escherichia_coli_K_12_DH10B NCBI 2008-03-17 Chromosome Fasta Files
BOWTIE_ESCHERICHIA_COLI_K_12_DH10B bowtie Escherichia_coli_K_12_DH10B NCBI 2008-03-17 Bowtie|Bowtie2 Index
BOWTIE2_ESCHERICHIA_COLI_K_12_DH10B bowtie2 Escherichia_coli_K_12_DH10B NCBI 2008-03-17 Bowtie|Bowtie2 Index
BWA_ESCHERICHIA_COLI_K_12_DH10B bwa Escherichia_coli_K_12_DH10B NCBI 2008-03-17 Bwa Index
PICARD_ESCHERICHIA_COLI_K_12_DH10B genomes Escherichia_coli_K_12_DH10B NCBI 2008-03-17 Picard .dict File
FAIDX_ESCHERICHIA_COLI_K_12_DH10B genomes Escherichia_coli_K_12_DH10B NCBI 2008-03-17 Fasta Index .fai File
ESCHERICHIA_COLI_K_12_DH10B_NCBI_2008_03_17 genomes Escherichia_coli_K_12_DH10B NCBI 2008-03-17 Main Directory
GENOME_ESCHERICHIA_COLI_K_12_DH10B_NCBI_2008_03_17 genomes Escherichia_coli_K_12_DH10B NCBI 2008-03-17 Genome Fasta File
CHR_ESCHERICHIA_COLI_K_12_DH10B_NCBI_2008_03_17 genomes Escherichia_coli_K_12_DH10B NCBI 2008-03-17 Chromosome Fasta Files
BOWTIE_ESCHERICHIA_COLI_K_12_DH10B_NCBI_2008_03_17 bowtie Escherichia_coli_K_12_DH10B NCBI 2008-03-17 Bowtie|Bowtie2 Index
BOWTIE2_ESCHERICHIA_COLI_K_12_DH10B_NCBI_2008_03_17 bowtie2 Escherichia_coli_K_12_DH10B NCBI 2008-03-17 Bowtie|Bowtie2 Index
BWA_ESCHERICHIA_COLI_K_12_DH10B_NCBI_2008_03_17 bwa Escherichia_coli_K_12_DH10B NCBI 2008-03-17 Bwa Index
PICARD_ESCHERICHIA_COLI_K_12_DH10B_NCBI_2008_03_17 genomes Escherichia_coli_K_12_DH10B NCBI 2008-03-17 Picard .dict File
FAIDX_ESCHERICHIA_COLI_K_12_DH10B_NCBI_2008_03_17 genomes Escherichia_coli_K_12_DH10B NCBI 2008-03-17 Fasta Index .fai File
ESCHERICHIA_COLI_K_12_MG1655 genomes Escherichia_coli_K_12_MG1655 NCBI 2001-10-15 Main Directory
GENOME_ESCHERICHIA_COLI_K_12_MG1655 genomes Escherichia_coli_K_12_MG1655 NCBI 2001-10-15 Genome Fasta File
CHR_ESCHERICHIA_COLI_K_12_MG1655 genomes Escherichia_coli_K_12_MG1655 NCBI 2001-10-15 Chromosome Fasta Files
BOWTIE_ESCHERICHIA_COLI_K_12_MG1655 bowtie Escherichia_coli_K_12_MG1655 NCBI 2001-10-15 Bowtie|Bowtie2 Index
BOWTIE2_ESCHERICHIA_COLI_K_12_MG1655 bowtie2 Escherichia_coli_K_12_MG1655 NCBI 2001-10-15 Bowtie|Bowtie2 Index
BWA_ESCHERICHIA_COLI_K_12_MG1655 bwa Escherichia_coli_K_12_MG1655 NCBI 2001-10-15 Bwa Index
PICARD_ESCHERICHIA_COLI_K_12_MG1655 genomes Escherichia_coli_K_12_MG1655 NCBI 2001-10-15 Picard .dict File
FAIDX_ESCHERICHIA_COLI_K_12_MG1655 genomes Escherichia_coli_K_12_MG1655 NCBI 2001-10-15 Fasta Index .fai File
ESCHERICHIA_COLI_K_12_MG1655_NCBI_2001_10_15 genomes Escherichia_coli_K_12_MG1655 NCBI 2001-10-15 Main Directory
GENOME_ESCHERICHIA_COLI_K_12_MG1655_NCBI_2001_10_15 genomes Escherichia_coli_K_12_MG1655 NCBI 2001-10-15 Genome Fasta File
CHR_ESCHERICHIA_COLI_K_12_MG1655_NCBI_2001_10_15 genomes Escherichia_coli_K_12_MG1655 NCBI 2001-10-15 Chromosome Fasta Files
BOWTIE_ESCHERICHIA_COLI_K_12_MG1655_NCBI_2001_10_15 bowtie Escherichia_coli_K_12_MG1655 NCBI 2001-10-15 Bowtie|Bowtie2 Index
BOWTIE2_ESCHERICHIA_COLI_K_12_MG1655_NCBI_2001_10_15 bowtie2 Escherichia_coli_K_12_MG1655 NCBI 2001-10-15 Bowtie|Bowtie2 Index
BWA_ESCHERICHIA_COLI_K_12_MG1655_NCBI_2001_10_15 bwa Escherichia_coli_K_12_MG1655 NCBI 2001-10-15 Bwa Index
PICARD_ESCHERICHIA_COLI_K_12_MG1655_NCBI_2001_10_15 genomes Escherichia_coli_K_12_MG1655 NCBI 2001-10-15 Picard .dict File
FAIDX_ESCHERICHIA_COLI_K_12_MG1655_NCBI_2001_10_15 genomes Escherichia_coli_K_12_MG1655 NCBI 2001-10-15 Fasta Index .fai File
CHICKEN genomes Gallus_gallus NCBI GRCg6a Main Directory
GENOME_CHICKEN genomes Gallus_gallus NCBI GRCg6a Genome Fasta File
CHR_CHICKEN genomes Gallus_gallus NCBI GRCg6a Chromosome Fasta Files
BOWTIE_CHICKEN bowtie Gallus_gallus NCBI GRCg6a Bowtie|Bowtie2 Index
BOWTIE2_CHICKEN bowtie2 Gallus_gallus NCBI GRCg6a Bowtie|Bowtie2 Index
BWA_CHICKEN bwa Gallus_gallus NCBI GRCg6a Bwa Index
PICARD_CHICKEN genomes Gallus_gallus NCBI GRCg6a Picard .dict File
FAIDX_CHICKEN genomes Gallus_gallus NCBI GRCg6a Fasta Index .fai File
GALLUS_GALLUS_NCBI_GRCG6A genomes Gallus_gallus NCBI GRCg6a Main Directory
GENOME_GALLUS_GALLUS_NCBI_GRCG6A genomes Gallus_gallus NCBI GRCg6a Genome Fasta File
CHR_GALLUS_GALLUS_NCBI_GRCG6A genomes Gallus_gallus NCBI GRCg6a Chromosome Fasta Files
BOWTIE_GALLUS_GALLUS_NCBI_GRCG6A bowtie Gallus_gallus NCBI GRCg6a Bowtie|Bowtie2 Index
BOWTIE2_GALLUS_GALLUS_NCBI_GRCG6A bowtie2 Gallus_gallus NCBI GRCg6a Bowtie|Bowtie2 Index
BWA_GALLUS_GALLUS_NCBI_GRCG6A bwa Gallus_gallus NCBI GRCg6a Bwa Index
PICARD_GALLUS_GALLUS_NCBI_GRCG6A genomes Gallus_gallus NCBI GRCg6a Picard .dict File
FAIDX_GALLUS_GALLUS_NCBI_GRCG6A genomes Gallus_gallus NCBI GRCg6a Fasta Index .fai File
GALLUS_GALLUS_NCBI_BUILD3_1 genomes Gallus_gallus NCBI build3.1 Main Directory
GENOME_GALLUS_GALLUS_NCBI_BUILD3_1 genomes Gallus_gallus NCBI build3.1 Genome Fasta File
CHR_GALLUS_GALLUS_NCBI_BUILD3_1 genomes Gallus_gallus NCBI build3.1 Chromosome Fasta Files
BOWTIE_GALLUS_GALLUS_NCBI_BUILD3_1 bowtie Gallus_gallus NCBI build3.1 Bowtie|Bowtie2 Index
BOWTIE2_GALLUS_GALLUS_NCBI_BUILD3_1 bowtie2 Gallus_gallus NCBI build3.1 Bowtie|Bowtie2 Index
BWA_GALLUS_GALLUS_NCBI_BUILD3_1 bwa Gallus_gallus NCBI build3.1 Bwa Index
PICARD_GALLUS_GALLUS_NCBI_BUILD3_1 genomes Gallus_gallus NCBI build3.1 Picard .dict File
FAIDX_GALLUS_GALLUS_NCBI_BUILD3_1 genomes Gallus_gallus NCBI build3.1 Fasta Index .fai File
GALLUS_GALLUS_UCSC_GALGAL4 genomes Gallus_gallus UCSC galGal4 Main Directory
GENOME_GALLUS_GALLUS_UCSC_GALGAL4 genomes Gallus_gallus UCSC galGal4 Genome Fasta File
CHR_GALLUS_GALLUS_UCSC_GALGAL4 genomes Gallus_gallus UCSC galGal4 Chromosome Fasta Files
BOWTIE_GALLUS_GALLUS_UCSC_GALGAL4 bowtie Gallus_gallus UCSC galGal4 Bowtie|Bowtie2 Index
BOWTIE2_GALLUS_GALLUS_UCSC_GALGAL4 bowtie2 Gallus_gallus UCSC galGal4 Bowtie|Bowtie2 Index
BWA_GALLUS_GALLUS_UCSC_GALGAL4 bwa Gallus_gallus UCSC galGal4 Bwa Index
PICARD_GALLUS_GALLUS_UCSC_GALGAL4 genomes Gallus_gallus UCSC galGal4 Picard .dict File
FAIDX_GALLUS_GALLUS_UCSC_GALGAL4 genomes Gallus_gallus UCSC galGal4 Fasta Index .fai File
GALLUS_GALLUS_UCSC_GALGAL5 genomes Gallus_gallus UCSC galGal5 Main Directory
GENOME_GALLUS_GALLUS_UCSC_GALGAL5 genomes Gallus_gallus UCSC galGal5 Genome Fasta File
CHR_GALLUS_GALLUS_UCSC_GALGAL5 genomes Gallus_gallus UCSC galGal5 Chromosome Fasta Files
BOWTIE_GALLUS_GALLUS_UCSC_GALGAL5 bowtie Gallus_gallus UCSC galGal5 Bowtie|Bowtie2 Index
BOWTIE2_GALLUS_GALLUS_UCSC_GALGAL5 bowtie2 Gallus_gallus UCSC galGal5 Bowtie|Bowtie2 Index
BWA_GALLUS_GALLUS_UCSC_GALGAL5 bwa Gallus_gallus UCSC galGal5 Bwa Index
PICARD_GALLUS_GALLUS_UCSC_GALGAL5 genomes Gallus_gallus UCSC galGal5 Picard .dict File
FAIDX_GALLUS_GALLUS_UCSC_GALGAL5 genomes Gallus_gallus UCSC galGal5 Fasta Index .fai File
SOYBEAN genomes Glycine_max Ensembl Gm01 Main Directory
GENOME_SOYBEAN genomes Glycine_max Ensembl Gm01 Genome Fasta File
CHR_SOYBEAN genomes Glycine_max Ensembl Gm01 Chromosome Fasta Files
BOWTIE_SOYBEAN bowtie Glycine_max Ensembl Gm01 Bowtie|Bowtie2 Index
BOWTIE2_SOYBEAN bowtie2 Glycine_max Ensembl Gm01 Bowtie|Bowtie2 Index
BWA_SOYBEAN bwa Glycine_max Ensembl Gm01 Bwa Index
PICARD_SOYBEAN genomes Glycine_max Ensembl Gm01 Picard .dict File
FAIDX_SOYBEAN genomes Glycine_max Ensembl Gm01 Fasta Index .fai File
GLYCINE_MAX_ENSEMBL_GM01 genomes Glycine_max Ensembl Gm01 Main Directory
GENOME_GLYCINE_MAX_ENSEMBL_GM01 genomes Glycine_max Ensembl Gm01 Genome Fasta File
CHR_GLYCINE_MAX_ENSEMBL_GM01 genomes Glycine_max Ensembl Gm01 Chromosome Fasta Files
BOWTIE_GLYCINE_MAX_ENSEMBL_GM01 bowtie Glycine_max Ensembl Gm01 Bowtie|Bowtie2 Index
BOWTIE2_GLYCINE_MAX_ENSEMBL_GM01 bowtie2 Glycine_max Ensembl Gm01 Bowtie|Bowtie2 Index
BWA_GLYCINE_MAX_ENSEMBL_GM01 bwa Glycine_max Ensembl Gm01 Bwa Index
PICARD_GLYCINE_MAX_ENSEMBL_GM01 genomes Glycine_max Ensembl Gm01 Picard .dict File
FAIDX_GLYCINE_MAX_ENSEMBL_GM01 genomes Glycine_max Ensembl Gm01 Fasta Index .fai File
HOMO_SAPIENS_ENSEMBL_GRCH37 genomes Homo_sapiens Ensembl GRCh37 Main Directory
GENOME_HOMO_SAPIENS_ENSEMBL_GRCH37 genomes Homo_sapiens Ensembl GRCh37 Genome Fasta File
CHR_HOMO_SAPIENS_ENSEMBL_GRCH37 genomes Homo_sapiens Ensembl GRCh37 Chromosome Fasta Files
BOWTIE_HOMO_SAPIENS_ENSEMBL_GRCH37 bowtie Homo_sapiens Ensembl GRCh37 Bowtie|Bowtie2 Index
BOWTIE2_HOMO_SAPIENS_ENSEMBL_GRCH37 bowtie2 Homo_sapiens Ensembl GRCh37 Bowtie|Bowtie2 Index
BWA_HOMO_SAPIENS_ENSEMBL_GRCH37 bwa Homo_sapiens Ensembl GRCh37 Bwa Index
PICARD_HOMO_SAPIENS_ENSEMBL_GRCH37 genomes Homo_sapiens Ensembl GRCh37 Picard .dict File
FAIDX_HOMO_SAPIENS_ENSEMBL_GRCH37 genomes Homo_sapiens Ensembl GRCh37 Fasta Index .fai File
HUMAN genomes Homo_sapiens NCBI GRCh38 Main Directory
GENOME_HUMAN genomes Homo_sapiens NCBI GRCh38 Genome Fasta File
CHR_HUMAN genomes Homo_sapiens NCBI GRCh38 Chromosome Fasta Files
BOWTIE_HUMAN bowtie Homo_sapiens NCBI GRCh38 Bowtie|Bowtie2 Index
BOWTIE2_HUMAN bowtie2 Homo_sapiens NCBI GRCh38 Bowtie|Bowtie2 Index
BWA_HUMAN bwa Homo_sapiens NCBI GRCh38 Bwa Index
PICARD_HUMAN genomes Homo_sapiens NCBI GRCh38 Picard .dict File
FAIDX_HUMAN genomes Homo_sapiens NCBI GRCh38 Fasta Index .fai File
HOMO_SAPIENS_NCBI_GRCH38 genomes Homo_sapiens NCBI GRCh38 Main Directory
GENOME_HOMO_SAPIENS_NCBI_GRCH38 genomes Homo_sapiens NCBI GRCh38 Genome Fasta File
CHR_HOMO_SAPIENS_NCBI_GRCH38 genomes Homo_sapiens NCBI GRCh38 Chromosome Fasta Files
BOWTIE_HOMO_SAPIENS_NCBI_GRCH38 bowtie Homo_sapiens NCBI GRCh38 Bowtie|Bowtie2 Index
BOWTIE2_HOMO_SAPIENS_NCBI_GRCH38 bowtie2 Homo_sapiens NCBI GRCh38 Bowtie|Bowtie2 Index
BWA_HOMO_SAPIENS_NCBI_GRCH38 bwa Homo_sapiens NCBI GRCh38 Bwa Index
PICARD_HOMO_SAPIENS_NCBI_GRCH38 genomes Homo_sapiens NCBI GRCh38 Picard .dict File
FAIDX_HOMO_SAPIENS_NCBI_GRCH38 genomes Homo_sapiens NCBI GRCh38 Fasta Index .fai File
HOMO_SAPIENS_NCBI_BUILD37_2 genomes Homo_sapiens NCBI build37.2 Main Directory
GENOME_HOMO_SAPIENS_NCBI_BUILD37_2 genomes Homo_sapiens NCBI build37.2 Genome Fasta File
CHR_HOMO_SAPIENS_NCBI_BUILD37_2 genomes Homo_sapiens NCBI build37.2 Chromosome Fasta Files
BOWTIE_HOMO_SAPIENS_NCBI_BUILD37_2 bowtie Homo_sapiens NCBI build37.2 Bowtie|Bowtie2 Index
BOWTIE2_HOMO_SAPIENS_NCBI_BUILD37_2 bowtie2 Homo_sapiens NCBI build37.2 Bowtie|Bowtie2 Index
BWA_HOMO_SAPIENS_NCBI_BUILD37_2 bwa Homo_sapiens NCBI build37.2 Bwa Index
PICARD_HOMO_SAPIENS_NCBI_BUILD37_2 genomes Homo_sapiens NCBI build37.2 Picard .dict File
FAIDX_HOMO_SAPIENS_NCBI_BUILD37_2 genomes Homo_sapiens NCBI build37.2 Fasta Index .fai File
HOMO_SAPIENS_UCSC_HG18 genomes Homo_sapiens UCSC hg18 Main Directory
GENOME_HOMO_SAPIENS_UCSC_HG18 genomes Homo_sapiens UCSC hg18 Genome Fasta File
CHR_HOMO_SAPIENS_UCSC_HG18 genomes Homo_sapiens UCSC hg18 Chromosome Fasta Files
BOWTIE_HOMO_SAPIENS_UCSC_HG18 bowtie Homo_sapiens UCSC hg18 Bowtie|Bowtie2 Index
BOWTIE2_HOMO_SAPIENS_UCSC_HG18 bowtie2 Homo_sapiens UCSC hg18 Bowtie|Bowtie2 Index
BWA_HOMO_SAPIENS_UCSC_HG18 bwa Homo_sapiens UCSC hg18 Bwa Index
PICARD_HOMO_SAPIENS_UCSC_HG18 genomes Homo_sapiens UCSC hg18 Picard .dict File
FAIDX_HOMO_SAPIENS_UCSC_HG18 genomes Homo_sapiens UCSC hg18 Fasta Index .fai File
HOMO_SAPIENS_UCSC_HG19 genomes Homo_sapiens UCSC hg19 Main Directory
GENOME_HOMO_SAPIENS_UCSC_HG19 genomes Homo_sapiens UCSC hg19 Genome Fasta File
CHR_HOMO_SAPIENS_UCSC_HG19 genomes Homo_sapiens UCSC hg19 Chromosome Fasta Files
BOWTIE_HOMO_SAPIENS_UCSC_HG19 bowtie Homo_sapiens UCSC hg19 Bowtie|Bowtie2 Index
BOWTIE2_HOMO_SAPIENS_UCSC_HG19 bowtie2 Homo_sapiens UCSC hg19 Bowtie|Bowtie2 Index
BWA_HOMO_SAPIENS_UCSC_HG19 bwa Homo_sapiens UCSC hg19 Bwa Index
PICARD_HOMO_SAPIENS_UCSC_HG19 genomes Homo_sapiens UCSC hg19 Picard .dict File
FAIDX_HOMO_SAPIENS_UCSC_HG19 genomes Homo_sapiens UCSC hg19 Fasta Index .fai File
HOMO_SAPIENS_UCSC_HG38 genomes Homo_sapiens UCSC hg38 Main Directory
GENOME_HOMO_SAPIENS_UCSC_HG38 genomes Homo_sapiens UCSC hg38 Genome Fasta File
CHR_HOMO_SAPIENS_UCSC_HG38 genomes Homo_sapiens UCSC hg38 Chromosome Fasta Files
BOWTIE_HOMO_SAPIENS_UCSC_HG38 bowtie Homo_sapiens UCSC hg38 Bowtie|Bowtie2 Index
BOWTIE2_HOMO_SAPIENS_UCSC_HG38 bowtie2 Homo_sapiens UCSC hg38 Bowtie|Bowtie2 Index
BWA_HOMO_SAPIENS_UCSC_HG38 bwa Homo_sapiens UCSC hg38 Bwa Index
PICARD_HOMO_SAPIENS_UCSC_HG38 genomes Homo_sapiens UCSC hg38 Picard .dict File
FAIDX_HOMO_SAPIENS_UCSC_HG38 genomes Homo_sapiens UCSC hg38 Fasta Index .fai File
SQUIRREL genomes Ictidomys_tridecemlineatus NCBI SpeTri2.0 Main Directory
GENOME_SQUIRREL genomes Ictidomys_tridecemlineatus NCBI SpeTri2.0 Genome Fasta File
CHR_SQUIRREL genomes Ictidomys_tridecemlineatus NCBI SpeTri2.0 Chromosome Fasta Files
BOWTIE_SQUIRREL bowtie Ictidomys_tridecemlineatus NCBI SpeTri2.0 Bowtie|Bowtie2 Index
BOWTIE2_SQUIRREL bowtie2 Ictidomys_tridecemlineatus NCBI SpeTri2.0 Bowtie|Bowtie2 Index
BWA_SQUIRREL bwa Ictidomys_tridecemlineatus NCBI SpeTri2.0 Bwa Index
PICARD_SQUIRREL genomes Ictidomys_tridecemlineatus NCBI SpeTri2.0 Picard .dict File
FAIDX_SQUIRREL genomes Ictidomys_tridecemlineatus NCBI SpeTri2.0 Fasta Index .fai File
ICTIDOMYS_TRIDECEMLINEATUS_NCBI_SPETRI2_0 genomes Ictidomys_tridecemlineatus NCBI SpeTri2.0 Main Directory
GENOME_ICTIDOMYS_TRIDECEMLINEATUS_NCBI_SPETRI2_0 genomes Ictidomys_tridecemlineatus NCBI SpeTri2.0 Genome Fasta File
CHR_ICTIDOMYS_TRIDECEMLINEATUS_NCBI_SPETRI2_0 genomes Ictidomys_tridecemlineatus NCBI SpeTri2.0 Chromosome Fasta Files
BOWTIE_ICTIDOMYS_TRIDECEMLINEATUS_NCBI_SPETRI2_0 bowtie Ictidomys_tridecemlineatus NCBI SpeTri2.0 Bowtie|Bowtie2 Index
BOWTIE2_ICTIDOMYS_TRIDECEMLINEATUS_NCBI_SPETRI2_0 bowtie2 Ictidomys_tridecemlineatus NCBI SpeTri2.0 Bowtie|Bowtie2 Index
BWA_ICTIDOMYS_TRIDECEMLINEATUS_NCBI_SPETRI2_0 bwa Ictidomys_tridecemlineatus NCBI SpeTri2.0 Bwa Index
PICARD_ICTIDOMYS_TRIDECEMLINEATUS_NCBI_SPETRI2_0 genomes Ictidomys_tridecemlineatus NCBI SpeTri2.0 Picard .dict File
FAIDX_ICTIDOMYS_TRIDECEMLINEATUS_NCBI_SPETRI2_0 genomes Ictidomys_tridecemlineatus NCBI SpeTri2.0 Fasta Index .fai File
MACACA_MULATTA genomes Macaca_mulatta Ensembl Mmul_1 Main Directory
GENOME_MACACA_MULATTA genomes Macaca_mulatta Ensembl Mmul_1 Genome Fasta File
CHR_MACACA_MULATTA genomes Macaca_mulatta Ensembl Mmul_1 Chromosome Fasta Files
BOWTIE_MACACA_MULATTA bowtie Macaca_mulatta Ensembl Mmul_1 Bowtie|Bowtie2 Index
BOWTIE2_MACACA_MULATTA bowtie2 Macaca_mulatta Ensembl Mmul_1 Bowtie|Bowtie2 Index
BWA_MACACA_MULATTA bwa Macaca_mulatta Ensembl Mmul_1 Bwa Index
PICARD_MACACA_MULATTA genomes Macaca_mulatta Ensembl Mmul_1 Picard .dict File
FAIDX_MACACA_MULATTA genomes Macaca_mulatta Ensembl Mmul_1 Fasta Index .fai File
MACACA_MULATTA_ENSEMBL_MMUL_1 genomes Macaca_mulatta Ensembl Mmul_1 Main Directory
GENOME_MACACA_MULATTA_ENSEMBL_MMUL_1 genomes Macaca_mulatta Ensembl Mmul_1 Genome Fasta File
CHR_MACACA_MULATTA_ENSEMBL_MMUL_1 genomes Macaca_mulatta Ensembl Mmul_1 Chromosome Fasta Files
BOWTIE_MACACA_MULATTA_ENSEMBL_MMUL_1 bowtie Macaca_mulatta Ensembl Mmul_1 Bowtie|Bowtie2 Index
BOWTIE2_MACACA_MULATTA_ENSEMBL_MMUL_1 bowtie2 Macaca_mulatta Ensembl Mmul_1 Bowtie|Bowtie2 Index
BWA_MACACA_MULATTA_ENSEMBL_MMUL_1 bwa Macaca_mulatta Ensembl Mmul_1 Bwa Index
PICARD_MACACA_MULATTA_ENSEMBL_MMUL_1 genomes Macaca_mulatta Ensembl Mmul_1 Picard .dict File
FAIDX_MACACA_MULATTA_ENSEMBL_MMUL_1 genomes Macaca_mulatta Ensembl Mmul_1 Fasta Index .fai File
MOUSE genomes Mus_musculus NCBI GRCm38 Main Directory
GENOME_MOUSE genomes Mus_musculus NCBI GRCm38 Genome Fasta File
CHR_MOUSE genomes Mus_musculus NCBI GRCm38 Chromosome Fasta Files
BOWTIE_MOUSE bowtie Mus_musculus NCBI GRCm38 Bowtie|Bowtie2 Index
BOWTIE2_MOUSE bowtie2 Mus_musculus NCBI GRCm38 Bowtie|Bowtie2 Index
BWA_MOUSE bwa Mus_musculus NCBI GRCm38 Bwa Index
PICARD_MOUSE genomes Mus_musculus NCBI GRCm38 Picard .dict File
FAIDX_MOUSE genomes Mus_musculus NCBI GRCm38 Fasta Index .fai File
MUS_MUSCULUS_NCBI_GRCM38 genomes Mus_musculus NCBI GRCm38 Main Directory
GENOME_MUS_MUSCULUS_NCBI_GRCM38 genomes Mus_musculus NCBI GRCm38 Genome Fasta File
CHR_MUS_MUSCULUS_NCBI_GRCM38 genomes Mus_musculus NCBI GRCm38 Chromosome Fasta Files
BOWTIE_MUS_MUSCULUS_NCBI_GRCM38 bowtie Mus_musculus NCBI GRCm38 Bowtie|Bowtie2 Index
BOWTIE2_MUS_MUSCULUS_NCBI_GRCM38 bowtie2 Mus_musculus NCBI GRCm38 Bowtie|Bowtie2 Index
BWA_MUS_MUSCULUS_NCBI_GRCM38 bwa Mus_musculus NCBI GRCm38 Bwa Index
PICARD_MUS_MUSCULUS_NCBI_GRCM38 genomes Mus_musculus NCBI GRCm38 Picard .dict File
FAIDX_MUS_MUSCULUS_NCBI_GRCM38 genomes Mus_musculus NCBI GRCm38 Fasta Index .fai File
MUS_MUSCULUS_UCSC_MM10 genomes Mus_musculus UCSC mm10 Main Directory
GENOME_MUS_MUSCULUS_UCSC_MM10 genomes Mus_musculus UCSC mm10 Genome Fasta File
CHR_MUS_MUSCULUS_UCSC_MM10 genomes Mus_musculus UCSC mm10 Chromosome Fasta Files
BOWTIE_MUS_MUSCULUS_UCSC_MM10 bowtie Mus_musculus UCSC mm10 Bowtie|Bowtie2 Index
BOWTIE2_MUS_MUSCULUS_UCSC_MM10 bowtie2 Mus_musculus UCSC mm10 Bowtie|Bowtie2 Index
BWA_MUS_MUSCULUS_UCSC_MM10 bwa Mus_musculus UCSC mm10 Bwa Index
PICARD_MUS_MUSCULUS_UCSC_MM10 genomes Mus_musculus UCSC mm10 Picard .dict File
FAIDX_MUS_MUSCULUS_UCSC_MM10 genomes Mus_musculus UCSC mm10 Fasta Index .fai File
MUS_MUSCULUS_UCSC_MM9 genomes Mus_musculus UCSC mm9 Main Directory
GENOME_MUS_MUSCULUS_UCSC_MM9 genomes Mus_musculus UCSC mm9 Genome Fasta File
CHR_MUS_MUSCULUS_UCSC_MM9 genomes Mus_musculus UCSC mm9 Chromosome Fasta Files
BOWTIE_MUS_MUSCULUS_UCSC_MM9 bowtie Mus_musculus UCSC mm9 Bowtie|Bowtie2 Index
BOWTIE2_MUS_MUSCULUS_UCSC_MM9 bowtie2 Mus_musculus UCSC mm9 Bowtie|Bowtie2 Index
BWA_MUS_MUSCULUS_UCSC_MM9 bwa Mus_musculus UCSC mm9 Bwa Index
PICARD_MUS_MUSCULUS_UCSC_MM9 genomes Mus_musculus UCSC mm9 Picard .dict File
FAIDX_MUS_MUSCULUS_UCSC_MM9 genomes Mus_musculus UCSC mm9 Fasta Index .fai File
MYCOBACTERIUM_TUBERCULOSIS_H37RV genomes Mycobacterium_tuberculosis_H37RV NCBI 2001-09-07 Main Directory
GENOME_MYCOBACTERIUM_TUBERCULOSIS_H37RV genomes Mycobacterium_tuberculosis_H37RV NCBI 2001-09-07 Genome Fasta File
CHR_MYCOBACTERIUM_TUBERCULOSIS_H37RV genomes Mycobacterium_tuberculosis_H37RV NCBI 2001-09-07 Chromosome Fasta Files
BOWTIE_MYCOBACTERIUM_TUBERCULOSIS_H37RV bowtie Mycobacterium_tuberculosis_H37RV NCBI 2001-09-07 Bowtie|Bowtie2 Index
BOWTIE2_MYCOBACTERIUM_TUBERCULOSIS_H37RV bowtie2 Mycobacterium_tuberculosis_H37RV NCBI 2001-09-07 Bowtie|Bowtie2 Index
BWA_MYCOBACTERIUM_TUBERCULOSIS_H37RV bwa Mycobacterium_tuberculosis_H37RV NCBI 2001-09-07 Bwa Index
PICARD_MYCOBACTERIUM_TUBERCULOSIS_H37RV genomes Mycobacterium_tuberculosis_H37RV NCBI 2001-09-07 Picard .dict File
FAIDX_MYCOBACTERIUM_TUBERCULOSIS_H37RV genomes Mycobacterium_tuberculosis_H37RV NCBI 2001-09-07 Fasta Index .fai File
MYCOBACTERIUM_TUBERCULOSIS_H37RV_NCBI_2001_09_07 genomes Mycobacterium_tuberculosis_H37RV NCBI 2001-09-07 Main Directory
GENOME_MYCOBACTERIUM_TUBERCULOSIS_H37RV_NCBI_2001_09_07 genomes Mycobacterium_tuberculosis_H37RV NCBI 2001-09-07 Genome Fasta File
CHR_MYCOBACTERIUM_TUBERCULOSIS_H37RV_NCBI_2001_09_07 genomes Mycobacterium_tuberculosis_H37RV NCBI 2001-09-07 Chromosome Fasta Files
BOWTIE_MYCOBACTERIUM_TUBERCULOSIS_H37RV_NCBI_2001_09_07 bowtie Mycobacterium_tuberculosis_H37RV NCBI 2001-09-07 Bowtie|Bowtie2 Index
BOWTIE2_MYCOBACTERIUM_TUBERCULOSIS_H37RV_NCBI_2001_09_07 bowtie2 Mycobacterium_tuberculosis_H37RV NCBI 2001-09-07 Bowtie|Bowtie2 Index
BWA_MYCOBACTERIUM_TUBERCULOSIS_H37RV_NCBI_2001_09_07 bwa Mycobacterium_tuberculosis_H37RV NCBI 2001-09-07 Bwa Index
PICARD_MYCOBACTERIUM_TUBERCULOSIS_H37RV_NCBI_2001_09_07 genomes Mycobacterium_tuberculosis_H37RV NCBI 2001-09-07 Picard .dict File
FAIDX_MYCOBACTERIUM_TUBERCULOSIS_H37RV_NCBI_2001_09_07 genomes Mycobacterium_tuberculosis_H37RV NCBI 2001-09-07 Fasta Index .fai File
RICE genomes Oryza_sativa_japonica Ensembl IRGSP-1.0 Main Directory
GENOME_RICE genomes Oryza_sativa_japonica Ensembl IRGSP-1.0 Genome Fasta File
CHR_RICE genomes Oryza_sativa_japonica Ensembl IRGSP-1.0 Chromosome Fasta Files
BOWTIE_RICE bowtie Oryza_sativa_japonica Ensembl IRGSP-1.0 Bowtie|Bowtie2 Index
BOWTIE2_RICE bowtie2 Oryza_sativa_japonica Ensembl IRGSP-1.0 Bowtie|Bowtie2 Index
BWA_RICE bwa Oryza_sativa_japonica Ensembl IRGSP-1.0 Bwa Index
PICARD_RICE genomes Oryza_sativa_japonica Ensembl IRGSP-1.0 Picard .dict File
FAIDX_RICE genomes Oryza_sativa_japonica Ensembl IRGSP-1.0 Fasta Index .fai File
ORYZA_SATIVA_JAPONICA_ENSEMBL_IRGSP_1_0 genomes Oryza_sativa_japonica Ensembl IRGSP-1.0 Main Directory
GENOME_ORYZA_SATIVA_JAPONICA_ENSEMBL_IRGSP_1_0 genomes Oryza_sativa_japonica Ensembl IRGSP-1.0 Genome Fasta File
CHR_ORYZA_SATIVA_JAPONICA_ENSEMBL_IRGSP_1_0 genomes Oryza_sativa_japonica Ensembl IRGSP-1.0 Chromosome Fasta Files
BOWTIE_ORYZA_SATIVA_JAPONICA_ENSEMBL_IRGSP_1_0 bowtie Oryza_sativa_japonica Ensembl IRGSP-1.0 Bowtie|Bowtie2 Index
BOWTIE2_ORYZA_SATIVA_JAPONICA_ENSEMBL_IRGSP_1_0 bowtie2 Oryza_sativa_japonica Ensembl IRGSP-1.0 Bowtie|Bowtie2 Index
BWA_ORYZA_SATIVA_JAPONICA_ENSEMBL_IRGSP_1_0 bwa Oryza_sativa_japonica Ensembl IRGSP-1.0 Bwa Index
PICARD_ORYZA_SATIVA_JAPONICA_ENSEMBL_IRGSP_1_0 genomes Oryza_sativa_japonica Ensembl IRGSP-1.0 Picard .dict File
FAIDX_ORYZA_SATIVA_JAPONICA_ENSEMBL_IRGSP_1_0 genomes Oryza_sativa_japonica Ensembl IRGSP-1.0 Fasta Index .fai File
SHEEP genomes Ovis_aries NCBI Oar3_1 Main Directory
GENOME_SHEEP genomes Ovis_aries NCBI Oar3_1 Genome Fasta File
CHR_SHEEP genomes Ovis_aries NCBI Oar3_1 Chromosome Fasta Files
BOWTIE_SHEEP bowtie Ovis_aries NCBI Oar3_1 Bowtie|Bowtie2 Index
BOWTIE2_SHEEP bowtie2 Ovis_aries NCBI Oar3_1 Bowtie|Bowtie2 Index
BWA_SHEEP bwa Ovis_aries NCBI Oar3_1 Bwa Index
PICARD_SHEEP genomes Ovis_aries NCBI Oar3_1 Picard .dict File
FAIDX_SHEEP genomes Ovis_aries NCBI Oar3_1 Fasta Index .fai File
OVIS_ARIES_NCBI_OAR3_1 genomes Ovis_aries NCBI Oar3_1 Main Directory
GENOME_OVIS_ARIES_NCBI_OAR3_1 genomes Ovis_aries NCBI Oar3_1 Genome Fasta File
CHR_OVIS_ARIES_NCBI_OAR3_1 genomes Ovis_aries NCBI Oar3_1 Chromosome Fasta Files
BOWTIE_OVIS_ARIES_NCBI_OAR3_1 bowtie Ovis_aries NCBI Oar3_1 Bowtie|Bowtie2 Index
BOWTIE2_OVIS_ARIES_NCBI_OAR3_1 bowtie2 Ovis_aries NCBI Oar3_1 Bowtie|Bowtie2 Index
BWA_OVIS_ARIES_NCBI_OAR3_1 bwa Ovis_aries NCBI Oar3_1 Bwa Index
PICARD_OVIS_ARIES_NCBI_OAR3_1 genomes Ovis_aries NCBI Oar3_1 Picard .dict File
FAIDX_OVIS_ARIES_NCBI_OAR3_1 genomes Ovis_aries NCBI Oar3_1 Fasta Index .fai File
OVIS_ARIES_NCBI_OAR4_0 genomes Ovis_aries NCBI Oar4_0 Main Directory
GENOME_OVIS_ARIES_NCBI_OAR4_0 genomes Ovis_aries NCBI Oar4_0 Genome Fasta File
CHR_OVIS_ARIES_NCBI_OAR4_0 genomes Ovis_aries NCBI Oar4_0 Chromosome Fasta Files
BOWTIE_OVIS_ARIES_NCBI_OAR4_0 bowtie Ovis_aries NCBI Oar4_0 Bowtie|Bowtie2 Index
BOWTIE2_OVIS_ARIES_NCBI_OAR4_0 bowtie2 Ovis_aries NCBI Oar4_0 Bowtie|Bowtie2 Index
BWA_OVIS_ARIES_NCBI_OAR4_0 bwa Ovis_aries NCBI Oar4_0 Bwa Index
PICARD_OVIS_ARIES_NCBI_OAR4_0 genomes Ovis_aries NCBI Oar4_0 Picard .dict File
FAIDX_OVIS_ARIES_NCBI_OAR4_0 genomes Ovis_aries NCBI Oar4_0 Fasta Index .fai File
OVIS_ARIES_NCBI_OAR_RAMBOUILLET_V1_0 genomes Ovis_aries NCBI Oar_rambouillet_v1.0 Main Directory
GENOME_OVIS_ARIES_NCBI_OAR_RAMBOUILLET_V1_0 genomes Ovis_aries NCBI Oar_rambouillet_v1.0 Genome Fasta File
CHR_OVIS_ARIES_NCBI_OAR_RAMBOUILLET_V1_0 genomes Ovis_aries NCBI Oar_rambouillet_v1.0 Chromosome Fasta Files
BOWTIE_OVIS_ARIES_NCBI_OAR_RAMBOUILLET_V1_0 bowtie Ovis_aries NCBI Oar_rambouillet_v1.0 Bowtie|Bowtie2 Index
BOWTIE2_OVIS_ARIES_NCBI_OAR_RAMBOUILLET_V1_0 bowtie2 Ovis_aries NCBI Oar_rambouillet_v1.0 Bowtie|Bowtie2 Index
BWA_OVIS_ARIES_NCBI_OAR_RAMBOUILLET_V1_0 bwa Ovis_aries NCBI Oar_rambouillet_v1.0 Bwa Index
PICARD_OVIS_ARIES_NCBI_OAR_RAMBOUILLET_V1_0 genomes Ovis_aries NCBI Oar_rambouillet_v1.0 Picard .dict File
FAIDX_OVIS_ARIES_NCBI_OAR_RAMBOUILLET_V1_0 genomes Ovis_aries NCBI Oar_rambouillet_v1.0 Fasta Index .fai File
PAN_TROGLODYTES genomes Pan_troglodytes NCBI build3.1 Main Directory
GENOME_PAN_TROGLODYTES genomes Pan_troglodytes NCBI build3.1 Genome Fasta File
CHR_PAN_TROGLODYTES genomes Pan_troglodytes NCBI build3.1 Chromosome Fasta Files
BOWTIE_PAN_TROGLODYTES bowtie Pan_troglodytes NCBI build3.1 Bowtie|Bowtie2 Index
BOWTIE2_PAN_TROGLODYTES bowtie2 Pan_troglodytes NCBI build3.1 Bowtie|Bowtie2 Index
BWA_PAN_TROGLODYTES bwa Pan_troglodytes NCBI build3.1 Bwa Index
PICARD_PAN_TROGLODYTES genomes Pan_troglodytes NCBI build3.1 Picard .dict File
FAIDX_PAN_TROGLODYTES genomes Pan_troglodytes NCBI build3.1 Fasta Index .fai File
PAN_TROGLODYTES_NCBI_BUILD3_1 genomes Pan_troglodytes NCBI build3.1 Main Directory
GENOME_PAN_TROGLODYTES_NCBI_BUILD3_1 genomes Pan_troglodytes NCBI build3.1 Genome Fasta File
CHR_PAN_TROGLODYTES_NCBI_BUILD3_1 genomes Pan_troglodytes NCBI build3.1 Chromosome Fasta Files
BOWTIE_PAN_TROGLODYTES_NCBI_BUILD3_1 bowtie Pan_troglodytes NCBI build3.1 Bowtie|Bowtie2 Index
BOWTIE2_PAN_TROGLODYTES_NCBI_BUILD3_1 bowtie2 Pan_troglodytes NCBI build3.1 Bowtie|Bowtie2 Index
BWA_PAN_TROGLODYTES_NCBI_BUILD3_1 bwa Pan_troglodytes NCBI build3.1 Bwa Index
PICARD_PAN_TROGLODYTES_NCBI_BUILD3_1 genomes Pan_troglodytes NCBI build3.1 Picard .dict File
FAIDX_PAN_TROGLODYTES_NCBI_BUILD3_1 genomes Pan_troglodytes NCBI build3.1 Fasta Index .fai File
PHIX genomes PhiX Illumina RTA Main Directory
GENOME_PHIX genomes PhiX Illumina RTA Genome Fasta File
CHR_PHIX genomes PhiX Illumina RTA Chromosome Fasta Files
BOWTIE_PHIX bowtie PhiX Illumina RTA Bowtie|Bowtie2 Index
BOWTIE2_PHIX bowtie2 PhiX Illumina RTA Bowtie|Bowtie2 Index
BWA_PHIX bwa PhiX Illumina RTA Bwa Index
PICARD_PHIX genomes PhiX Illumina RTA Picard .dict File
FAIDX_PHIX genomes PhiX Illumina RTA Fasta Index .fai File
PHIX_ILLUMINA_RTA genomes PhiX Illumina RTA Main Directory
GENOME_PHIX_ILLUMINA_RTA genomes PhiX Illumina RTA Genome Fasta File
CHR_PHIX_ILLUMINA_RTA genomes PhiX Illumina RTA Chromosome Fasta Files
BOWTIE_PHIX_ILLUMINA_RTA bowtie PhiX Illumina RTA Bowtie|Bowtie2 Index
BOWTIE2_PHIX_ILLUMINA_RTA bowtie2 PhiX Illumina RTA Bowtie|Bowtie2 Index
BWA_PHIX_ILLUMINA_RTA bwa PhiX Illumina RTA Bwa Index
PICARD_PHIX_ILLUMINA_RTA genomes PhiX Illumina RTA Picard .dict File
FAIDX_PHIX_ILLUMINA_RTA genomes PhiX Illumina RTA Fasta Index .fai File
PSEUDOMONAS_AERUGINOSA_PAO1 genomes Pseudomonas_aeruginosa_PAO1 NCBI 2000-09-13 Main Directory
GENOME_PSEUDOMONAS_AERUGINOSA_PAO1 genomes Pseudomonas_aeruginosa_PAO1 NCBI 2000-09-13 Genome Fasta File
CHR_PSEUDOMONAS_AERUGINOSA_PAO1 genomes Pseudomonas_aeruginosa_PAO1 NCBI 2000-09-13 Chromosome Fasta Files
BOWTIE_PSEUDOMONAS_AERUGINOSA_PAO1 bowtie Pseudomonas_aeruginosa_PAO1 NCBI 2000-09-13 Bowtie|Bowtie2 Index
BOWTIE2_PSEUDOMONAS_AERUGINOSA_PAO1 bowtie2 Pseudomonas_aeruginosa_PAO1 NCBI 2000-09-13 Bowtie|Bowtie2 Index
BWA_PSEUDOMONAS_AERUGINOSA_PAO1 bwa Pseudomonas_aeruginosa_PAO1 NCBI 2000-09-13 Bwa Index
PICARD_PSEUDOMONAS_AERUGINOSA_PAO1 genomes Pseudomonas_aeruginosa_PAO1 NCBI 2000-09-13 Picard .dict File
FAIDX_PSEUDOMONAS_AERUGINOSA_PAO1 genomes Pseudomonas_aeruginosa_PAO1 NCBI 2000-09-13 Fasta Index .fai File
PSEUDOMONAS_AERUGINOSA_PAO1_NCBI_2000_09_13 genomes Pseudomonas_aeruginosa_PAO1 NCBI 2000-09-13 Main Directory
GENOME_PSEUDOMONAS_AERUGINOSA_PAO1_NCBI_2000_09_13 genomes Pseudomonas_aeruginosa_PAO1 NCBI 2000-09-13 Genome Fasta File
CHR_PSEUDOMONAS_AERUGINOSA_PAO1_NCBI_2000_09_13 genomes Pseudomonas_aeruginosa_PAO1 NCBI 2000-09-13 Chromosome Fasta Files
BOWTIE_PSEUDOMONAS_AERUGINOSA_PAO1_NCBI_2000_09_13 bowtie Pseudomonas_aeruginosa_PAO1 NCBI 2000-09-13 Bowtie|Bowtie2 Index
BOWTIE2_PSEUDOMONAS_AERUGINOSA_PAO1_NCBI_2000_09_13 bowtie2 Pseudomonas_aeruginosa_PAO1 NCBI 2000-09-13 Bowtie|Bowtie2 Index
BWA_PSEUDOMONAS_AERUGINOSA_PAO1_NCBI_2000_09_13 bwa Pseudomonas_aeruginosa_PAO1 NCBI 2000-09-13 Bwa Index
PICARD_PSEUDOMONAS_AERUGINOSA_PAO1_NCBI_2000_09_13 genomes Pseudomonas_aeruginosa_PAO1 NCBI 2000-09-13 Picard .dict File
FAIDX_PSEUDOMONAS_AERUGINOSA_PAO1_NCBI_2000_09_13 genomes Pseudomonas_aeruginosa_PAO1 NCBI 2000-09-13 Fasta Index .fai File
RAT genomes Rattus_norvegicus NCBI Rnor_5.0 Main Directory
GENOME_RAT genomes Rattus_norvegicus NCBI Rnor_5.0 Genome Fasta File
CHR_RAT genomes Rattus_norvegicus NCBI Rnor_5.0 Chromosome Fasta Files
BOWTIE_RAT bowtie Rattus_norvegicus NCBI Rnor_5.0 Bowtie|Bowtie2 Index
BOWTIE2_RAT bowtie2 Rattus_norvegicus NCBI Rnor_5.0 Bowtie|Bowtie2 Index
BWA_RAT bwa Rattus_norvegicus NCBI Rnor_5.0 Bwa Index
PICARD_RAT genomes Rattus_norvegicus NCBI Rnor_5.0 Picard .dict File
FAIDX_RAT genomes Rattus_norvegicus NCBI Rnor_5.0 Fasta Index .fai File
RATTUS_NORVEGICUS_NCBI_RNOR_5_0 genomes Rattus_norvegicus NCBI Rnor_5.0 Main Directory
GENOME_RATTUS_NORVEGICUS_NCBI_RNOR_5_0 genomes Rattus_norvegicus NCBI Rnor_5.0 Genome Fasta File
CHR_RATTUS_NORVEGICUS_NCBI_RNOR_5_0 genomes Rattus_norvegicus NCBI Rnor_5.0 Chromosome Fasta Files
BOWTIE_RATTUS_NORVEGICUS_NCBI_RNOR_5_0 bowtie Rattus_norvegicus NCBI Rnor_5.0 Bowtie|Bowtie2 Index
BOWTIE2_RATTUS_NORVEGICUS_NCBI_RNOR_5_0 bowtie2 Rattus_norvegicus NCBI Rnor_5.0 Bowtie|Bowtie2 Index
BWA_RATTUS_NORVEGICUS_NCBI_RNOR_5_0 bwa Rattus_norvegicus NCBI Rnor_5.0 Bwa Index
PICARD_RATTUS_NORVEGICUS_NCBI_RNOR_5_0 genomes Rattus_norvegicus NCBI Rnor_5.0 Picard .dict File
FAIDX_RATTUS_NORVEGICUS_NCBI_RNOR_5_0 genomes Rattus_norvegicus NCBI Rnor_5.0 Fasta Index .fai File
RATTUS_NORVEGICUS_NCBI_RNOR_6_0 genomes Rattus_norvegicus NCBI Rnor_6.0 Main Directory
GENOME_RATTUS_NORVEGICUS_NCBI_RNOR_6_0 genomes Rattus_norvegicus NCBI Rnor_6.0 Genome Fasta File
CHR_RATTUS_NORVEGICUS_NCBI_RNOR_6_0 genomes Rattus_norvegicus NCBI Rnor_6.0 Chromosome Fasta Files
BOWTIE_RATTUS_NORVEGICUS_NCBI_RNOR_6_0 bowtie Rattus_norvegicus NCBI Rnor_6.0 Bowtie|Bowtie2 Index
BOWTIE2_RATTUS_NORVEGICUS_NCBI_RNOR_6_0 bowtie2 Rattus_norvegicus NCBI Rnor_6.0 Bowtie|Bowtie2 Index
BWA_RATTUS_NORVEGICUS_NCBI_RNOR_6_0 bwa Rattus_norvegicus NCBI Rnor_6.0 Bwa Index
PICARD_RATTUS_NORVEGICUS_NCBI_RNOR_6_0 genomes Rattus_norvegicus NCBI Rnor_6.0 Picard .dict File
FAIDX_RATTUS_NORVEGICUS_NCBI_RNOR_6_0 genomes Rattus_norvegicus NCBI Rnor_6.0 Fasta Index .fai File
YEAST genomes Saccharomyces_cerevisiae NCBI build3.1 Main Directory
GENOME_YEAST genomes Saccharomyces_cerevisiae NCBI build3.1 Genome Fasta File
CHR_YEAST genomes Saccharomyces_cerevisiae NCBI build3.1 Chromosome Fasta Files
BOWTIE_YEAST bowtie Saccharomyces_cerevisiae NCBI build3.1 Bowtie|Bowtie2 Index
BOWTIE2_YEAST bowtie2 Saccharomyces_cerevisiae NCBI build3.1 Bowtie|Bowtie2 Index
BWA_YEAST bwa Saccharomyces_cerevisiae NCBI build3.1 Bwa Index
PICARD_YEAST genomes Saccharomyces_cerevisiae NCBI build3.1 Picard .dict File
FAIDX_YEAST genomes Saccharomyces_cerevisiae NCBI build3.1 Fasta Index .fai File
SACCHAROMYCES_CEREVISIAE_NCBI_BUILD3_1 genomes Saccharomyces_cerevisiae NCBI build3.1 Main Directory
GENOME_SACCHAROMYCES_CEREVISIAE_NCBI_BUILD3_1 genomes Saccharomyces_cerevisiae NCBI build3.1 Genome Fasta File
CHR_SACCHAROMYCES_CEREVISIAE_NCBI_BUILD3_1 genomes Saccharomyces_cerevisiae NCBI build3.1 Chromosome Fasta Files
BOWTIE_SACCHAROMYCES_CEREVISIAE_NCBI_BUILD3_1 bowtie Saccharomyces_cerevisiae NCBI build3.1 Bowtie|Bowtie2 Index
BOWTIE2_SACCHAROMYCES_CEREVISIAE_NCBI_BUILD3_1 bowtie2 Saccharomyces_cerevisiae NCBI build3.1 Bowtie|Bowtie2 Index
BWA_SACCHAROMYCES_CEREVISIAE_NCBI_BUILD3_1 bwa Saccharomyces_cerevisiae NCBI build3.1 Bwa Index
PICARD_SACCHAROMYCES_CEREVISIAE_NCBI_BUILD3_1 genomes Saccharomyces_cerevisiae NCBI build3.1 Picard .dict File
FAIDX_SACCHAROMYCES_CEREVISIAE_NCBI_BUILD3_1 genomes Saccharomyces_cerevisiae NCBI build3.1 Fasta Index .fai File
SORGHUM genomes Sorghum_bicolor Ensembl Sbi1 Main Directory
GENOME_SORGHUM genomes Sorghum_bicolor Ensembl Sbi1 Genome Fasta File
CHR_SORGHUM genomes Sorghum_bicolor Ensembl Sbi1 Chromosome Fasta Files
BOWTIE_SORGHUM bowtie Sorghum_bicolor Ensembl Sbi1 Bowtie|Bowtie2 Index
BOWTIE2_SORGHUM bowtie2 Sorghum_bicolor Ensembl Sbi1 Bowtie|Bowtie2 Index
BWA_SORGHUM bwa Sorghum_bicolor Ensembl Sbi1 Bwa Index
PICARD_SORGHUM genomes Sorghum_bicolor Ensembl Sbi1 Picard .dict File
FAIDX_SORGHUM genomes Sorghum_bicolor Ensembl Sbi1 Fasta Index .fai File
SORGHUM_BICOLOR_ENSEMBL_SBI1 genomes Sorghum_bicolor Ensembl Sbi1 Main Directory
GENOME_SORGHUM_BICOLOR_ENSEMBL_SBI1 genomes Sorghum_bicolor Ensembl Sbi1 Genome Fasta File
CHR_SORGHUM_BICOLOR_ENSEMBL_SBI1 genomes Sorghum_bicolor Ensembl Sbi1 Chromosome Fasta Files
BOWTIE_SORGHUM_BICOLOR_ENSEMBL_SBI1 bowtie Sorghum_bicolor Ensembl Sbi1 Bowtie|Bowtie2 Index
BOWTIE2_SORGHUM_BICOLOR_ENSEMBL_SBI1 bowtie2 Sorghum_bicolor Ensembl Sbi1 Bowtie|Bowtie2 Index
BWA_SORGHUM_BICOLOR_ENSEMBL_SBI1 bwa Sorghum_bicolor Ensembl Sbi1 Bwa Index
PICARD_SORGHUM_BICOLOR_ENSEMBL_SBI1 genomes Sorghum_bicolor Ensembl Sbi1 Picard .dict File
FAIDX_SORGHUM_BICOLOR_ENSEMBL_SBI1 genomes Sorghum_bicolor Ensembl Sbi1 Fasta Index .fai File
STAPHYLOCOCCUS_AUREUS_NCTC_8325 genomes Staphylococcus_aureus_NCTC_8325 NCBI 2006-02-13 Main Directory
GENOME_STAPHYLOCOCCUS_AUREUS_NCTC_8325 genomes Staphylococcus_aureus_NCTC_8325 NCBI 2006-02-13 Genome Fasta File
CHR_STAPHYLOCOCCUS_AUREUS_NCTC_8325 genomes Staphylococcus_aureus_NCTC_8325 NCBI 2006-02-13 Chromosome Fasta Files
BOWTIE_STAPHYLOCOCCUS_AUREUS_NCTC_8325 bowtie Staphylococcus_aureus_NCTC_8325 NCBI 2006-02-13 Bowtie|Bowtie2 Index
BOWTIE2_STAPHYLOCOCCUS_AUREUS_NCTC_8325 bowtie2 Staphylococcus_aureus_NCTC_8325 NCBI 2006-02-13 Bowtie|Bowtie2 Index
BWA_STAPHYLOCOCCUS_AUREUS_NCTC_8325 bwa Staphylococcus_aureus_NCTC_8325 NCBI 2006-02-13 Bwa Index
PICARD_STAPHYLOCOCCUS_AUREUS_NCTC_8325 genomes Staphylococcus_aureus_NCTC_8325 NCBI 2006-02-13 Picard .dict File
FAIDX_STAPHYLOCOCCUS_AUREUS_NCTC_8325 genomes Staphylococcus_aureus_NCTC_8325 NCBI 2006-02-13 Fasta Index .fai File
STAPHYLOCOCCUS_AUREUS_NCTC_8325_NCBI_2006_02_13 genomes Staphylococcus_aureus_NCTC_8325 NCBI 2006-02-13 Main Directory
GENOME_STAPHYLOCOCCUS_AUREUS_NCTC_8325_NCBI_2006_02_13 genomes Staphylococcus_aureus_NCTC_8325 NCBI 2006-02-13 Genome Fasta File
CHR_STAPHYLOCOCCUS_AUREUS_NCTC_8325_NCBI_2006_02_13 genomes Staphylococcus_aureus_NCTC_8325 NCBI 2006-02-13 Chromosome Fasta Files
BOWTIE_STAPHYLOCOCCUS_AUREUS_NCTC_8325_NCBI_2006_02_13 bowtie Staphylococcus_aureus_NCTC_8325 NCBI 2006-02-13 Bowtie|Bowtie2 Index
BOWTIE2_STAPHYLOCOCCUS_AUREUS_NCTC_8325_NCBI_2006_02_13 bowtie2 Staphylococcus_aureus_NCTC_8325 NCBI 2006-02-13 Bowtie|Bowtie2 Index
BWA_STAPHYLOCOCCUS_AUREUS_NCTC_8325_NCBI_2006_02_13 bwa Staphylococcus_aureus_NCTC_8325 NCBI 2006-02-13 Bwa Index
PICARD_STAPHYLOCOCCUS_AUREUS_NCTC_8325_NCBI_2006_02_13 genomes Staphylococcus_aureus_NCTC_8325 NCBI 2006-02-13 Picard .dict File
FAIDX_STAPHYLOCOCCUS_AUREUS_NCTC_8325_NCBI_2006_02_13 genomes Staphylococcus_aureus_NCTC_8325 NCBI 2006-02-13 Fasta Index .fai File
PIG genomes Sus_scrofa NCBI Sscrofa10.2 Main Directory
GENOME_PIG genomes Sus_scrofa NCBI Sscrofa10.2 Genome Fasta File
CHR_PIG genomes Sus_scrofa NCBI Sscrofa10.2 Chromosome Fasta Files
BOWTIE_PIG bowtie Sus_scrofa NCBI Sscrofa10.2 Bowtie|Bowtie2 Index
BOWTIE2_PIG bowtie2 Sus_scrofa NCBI Sscrofa10.2 Bowtie|Bowtie2 Index
BWA_PIG bwa Sus_scrofa NCBI Sscrofa10.2 Bwa Index
PICARD_PIG genomes Sus_scrofa NCBI Sscrofa10.2 Picard .dict File
FAIDX_PIG genomes Sus_scrofa NCBI Sscrofa10.2 Fasta Index .fai File
SUS_SCROFA_NCBI_SSCROFA10_2 genomes Sus_scrofa NCBI Sscrofa10.2 Main Directory
GENOME_SUS_SCROFA_NCBI_SSCROFA10_2 genomes Sus_scrofa NCBI Sscrofa10.2 Genome Fasta File
CHR_SUS_SCROFA_NCBI_SSCROFA10_2 genomes Sus_scrofa NCBI Sscrofa10.2 Chromosome Fasta Files
BOWTIE_SUS_SCROFA_NCBI_SSCROFA10_2 bowtie Sus_scrofa NCBI Sscrofa10.2 Bowtie|Bowtie2 Index
BOWTIE2_SUS_SCROFA_NCBI_SSCROFA10_2 bowtie2 Sus_scrofa NCBI Sscrofa10.2 Bowtie|Bowtie2 Index
BWA_SUS_SCROFA_NCBI_SSCROFA10_2 bwa Sus_scrofa NCBI Sscrofa10.2 Bwa Index
PICARD_SUS_SCROFA_NCBI_SSCROFA10_2 genomes Sus_scrofa NCBI Sscrofa10.2 Picard .dict File
FAIDX_SUS_SCROFA_NCBI_SSCROFA10_2 genomes Sus_scrofa NCBI Sscrofa10.2 Fasta Index .fai File
MAIZE genomes Zea_mays Ensembl AGPv3 Main Directory
GENOME_MAIZE genomes Zea_mays Ensembl AGPv3 Genome Fasta File
CHR_MAIZE genomes Zea_mays Ensembl AGPv3 Chromosome Fasta Files
BOWTIE_MAIZE bowtie Zea_mays Ensembl AGPv3 Bowtie|Bowtie2 Index
BOWTIE2_MAIZE bowtie2 Zea_mays Ensembl AGPv3 Bowtie|Bowtie2 Index
BWA_MAIZE bwa Zea_mays Ensembl AGPv3 Bwa Index
PICARD_MAIZE genomes Zea_mays Ensembl AGPv3 Picard .dict File
FAIDX_MAIZE genomes Zea_mays Ensembl AGPv3 Fasta Index .fai File
ZEA_MAYS_ENSEMBL_AGPV3 genomes Zea_mays Ensembl AGPv3 Main Directory
GENOME_ZEA_MAYS_ENSEMBL_AGPV3 genomes Zea_mays Ensembl AGPv3 Genome Fasta File
CHR_ZEA_MAYS_ENSEMBL_AGPV3 genomes Zea_mays Ensembl AGPv3 Chromosome Fasta Files
BOWTIE_ZEA_MAYS_ENSEMBL_AGPV3 bowtie Zea_mays Ensembl AGPv3 Bowtie|Bowtie2 Index
BOWTIE2_ZEA_MAYS_ENSEMBL_AGPV3 bowtie2 Zea_mays Ensembl AGPv3 Bowtie|Bowtie2 Index
BWA_ZEA_MAYS_ENSEMBL_AGPV3 bwa Zea_mays Ensembl AGPv3 Bwa Index
PICARD_ZEA_MAYS_ENSEMBL_AGPV3 genomes Zea_mays Ensembl AGPv3 Picard .dict File
FAIDX_ZEA_MAYS_ENSEMBL_AGPV3 genomes Zea_mays Ensembl AGPv3 Fasta Index .fai File
ZEA_MAYS_ENSEMBL_AGPV4 genomes Zea_mays Ensembl AGPv4 Main Directory
GENOME_ZEA_MAYS_ENSEMBL_AGPV4 genomes Zea_mays Ensembl AGPv4 Genome Fasta File
CHR_ZEA_MAYS_ENSEMBL_AGPV4 genomes Zea_mays Ensembl AGPv4 Chromosome Fasta Files
BOWTIE_ZEA_MAYS_ENSEMBL_AGPV4 bowtie Zea_mays Ensembl AGPv4 Bowtie|Bowtie2 Index
BOWTIE2_ZEA_MAYS_ENSEMBL_AGPV4 bowtie2 Zea_mays Ensembl AGPv4 Bowtie|Bowtie2 Index
BWA_ZEA_MAYS_ENSEMBL_AGPV4 bwa Zea_mays Ensembl AGPv4 Bwa Index
PICARD_ZEA_MAYS_ENSEMBL_AGPV4 genomes Zea_mays Ensembl AGPv4 Picard .dict File
FAIDX_ZEA_MAYS_ENSEMBL_AGPV4 genomes Zea_mays Ensembl AGPv4 Fasta Index .fai File