1. HCC-DOCS
  2. HCC-DOCS Home
  3. HCC Documentation
  4. Running Applications
  5. Bioinformatics Tools
  6. Biodata Module

HCC-DOCS : Organisms

Created by Adam Caprez on Mar 10, 2016

Arabidopsis_thaliana

Short Name Source Build Type
ARABIDOPSIS_THALIANA_NCBI_TAIR10 NCBI TAIR10 Main Directory
ATH NCBI TAIR10 Main Directory
BOWTIE_ARABIDOPSIS_THALIANA_NCBI_TAIR10 NCBI TAIR10 Bwa|Bowtie|Bowtie2 Index
BOWTIE_ATH NCBI TAIR10 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_ARABIDOPSIS_THALIANA_NCBI_TAIR10 NCBI TAIR10 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_ATH NCBI TAIR10 Bwa|Bowtie|Bowtie2 Index
BWA_ARABIDOPSIS_THALIANA_NCBI_TAIR10 NCBI TAIR10 Bwa|Bowtie|Bowtie2 Index
BWA_ATH NCBI TAIR10 Bwa|Bowtie|Bowtie2 Index
CHR_ARABIDOPSIS_THALIANA_NCBI_TAIR10 NCBI TAIR10 Chromosome Fasta Files
CHR_ATH NCBI TAIR10 Chromosome Fasta Files
FAIDX_ARABIDOPSIS_THALIANA_NCBI_TAIR10 NCBI TAIR10 Fasta Index .fai File
FAIDX_ATH NCBI TAIR10 Fasta Index .fai File
GENOME_ARABIDOPSIS_THALIANA_NCBI_TAIR10 NCBI TAIR10 Genome Fasta File
GENOME_ATH NCBI TAIR10 Genome Fasta File
PICARD_ARABIDOPSIS_THALIANA_NCBI_TAIR10 NCBI TAIR10 Picard .dict File
PICARD_ATH NCBI TAIR10 Picard .dict File

Bacillus_cereus_ATCC_10987

Short Name Source Build Type
BACILLUS_CEREUS_ATCC_10987 NCBI 2004-02-13 Main Directory
BACILLUS_CEREUS_ATCC_10987_NCBI_2004_02_13 NCBI 2004-02-13 Main Directory
BOWTIE_BACILLUS_CEREUS_ATCC_10987 NCBI 2004-02-13 Bwa|Bowtie|Bowtie2 Index
BOWTIE_BACILLUS_CEREUS_ATCC_10987_NCBI_2004_02_13 NCBI 2004-02-13 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_BACILLUS_CEREUS_ATCC_10987 NCBI 2004-02-13 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_BACILLUS_CEREUS_ATCC_10987_NCBI_2004_02_13 NCBI 2004-02-13 Bwa|Bowtie|Bowtie2 Index
BWA_BACILLUS_CEREUS_ATCC_10987 NCBI 2004-02-13 Bwa|Bowtie|Bowtie2 Index
BWA_BACILLUS_CEREUS_ATCC_10987_NCBI_2004_02_13 NCBI 2004-02-13 Bwa|Bowtie|Bowtie2 Index
CHR_BACILLUS_CEREUS_ATCC_10987 NCBI 2004-02-13 Chromosome Fasta Files
CHR_BACILLUS_CEREUS_ATCC_10987_NCBI_2004_02_13 NCBI 2004-02-13 Chromosome Fasta Files
FAIDX_BACILLUS_CEREUS_ATCC_10987 NCBI 2004-02-13 Fasta Index .fai File
FAIDX_BACILLUS_CEREUS_ATCC_10987_NCBI_2004_02_13 NCBI 2004-02-13 Fasta Index .fai File
GENOME_BACILLUS_CEREUS_ATCC_10987 NCBI 2004-02-13 Genome Fasta File
GENOME_BACILLUS_CEREUS_ATCC_10987_NCBI_2004_02_13 NCBI 2004-02-13 Genome Fasta File
PICARD_BACILLUS_CEREUS_ATCC_10987 NCBI 2004-02-13 Picard .dict File
PICARD_BACILLUS_CEREUS_ATCC_10987_NCBI_2004_02_13 NCBI 2004-02-13 Picard .dict File

Bacillus_subtilis_168

Short Name Source Build Type
BACILLUS_SUBTILIS_168_ENSEMBL_EB2 Ensembl EB2 Main Directory
BOWTIE_BACILLUS_SUBTILIS_168_ENSEMBL_EB2 Ensembl EB2 Bwa|Bowtie|Bowtie2 Index
BOWTIE_BSUBT_168 Ensembl EB2 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_BACILLUS_SUBTILIS_168_ENSEMBL_EB2 Ensembl EB2 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_BSUBT_168 Ensembl EB2 Bwa|Bowtie|Bowtie2 Index
BSUBT_168 Ensembl EB2 Main Directory
BWA_BACILLUS_SUBTILIS_168_ENSEMBL_EB2 Ensembl EB2 Bwa|Bowtie|Bowtie2 Index
BWA_BSUBT_168 Ensembl EB2 Bwa|Bowtie|Bowtie2 Index
CHR_BACILLUS_SUBTILIS_168_ENSEMBL_EB2 Ensembl EB2 Chromosome Fasta Files
CHR_BSUBT_168 Ensembl EB2 Chromosome Fasta Files
FAIDX_BACILLUS_SUBTILIS_168_ENSEMBL_EB2 Ensembl EB2 Fasta Index .fai File
FAIDX_BSUBT_168 Ensembl EB2 Fasta Index .fai File
GENOME_BACILLUS_SUBTILIS_168_ENSEMBL_EB2 Ensembl EB2 Genome Fasta File
GENOME_BSUBT_168 Ensembl EB2 Genome Fasta File
PICARD_BACILLUS_SUBTILIS_168_ENSEMBL_EB2 Ensembl EB2 Picard .dict File
PICARD_BSUBT_168 Ensembl EB2 Picard .dict File

Bos_taurus

Short Name Source Build Type
BOS_TAURUS_ENSEMBL_UMD_3_1 Ensembl UMD_3.1 Main Directory
BOS_TAURUS_ENSEMBL_UMD3_1 Ensembl UMD3.1 Main Directory
BOS_TAURUS_NCBI_UMD_3_1 NCBI UMD_3.1 Main Directory
BOS_TAURUS_NCBI_UMD_3_1_1 NCBI UMD_3.1.1 Main Directory
BOWTIE_BOS_TAURUS_ENSEMBL_UMD_3_1 Ensembl UMD_3.1 Bwa|Bowtie|Bowtie2 Index
BOWTIE_BOS_TAURUS_ENSEMBL_UMD3_1 Ensembl UMD3.1 Bwa|Bowtie|Bowtie2 Index
BOWTIE_BOS_TAURUS_NCBI_UMD_3_1 NCBI UMD_3.1 Bwa|Bowtie|Bowtie2 Index
BOWTIE_BOS_TAURUS_NCBI_UMD_3_1_1 NCBI UMD_3.1.1 Bwa|Bowtie|Bowtie2 Index
BOWTIE_COW NCBI UMD_3.1 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_BOS_TAURUS_ENSEMBL_UMD_3_1 Ensembl UMD_3.1 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_BOS_TAURUS_ENSEMBL_UMD3_1 Ensembl UMD3.1 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_BOS_TAURUS_NCBI_UMD_3_1 NCBI UMD_3.1 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_BOS_TAURUS_NCBI_UMD_3_1_1 NCBI UMD_3.1.1 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_COW NCBI UMD_3.1 Bwa|Bowtie|Bowtie2 Index
BWA_BOS_TAURUS_ENSEMBL_UMD_3_1 Ensembl UMD_3.1 Bwa|Bowtie|Bowtie2 Index
BWA_BOS_TAURUS_ENSEMBL_UMD3_1 Ensembl UMD3.1 Bwa|Bowtie|Bowtie2 Index
BWA_BOS_TAURUS_NCBI_UMD_3_1 NCBI UMD_3.1 Bwa|Bowtie|Bowtie2 Index
BWA_BOS_TAURUS_NCBI_UMD_3_1_1 NCBI UMD_3.1.1 Bwa|Bowtie|Bowtie2 Index
BWA_COW NCBI UMD_3.1 Bwa|Bowtie|Bowtie2 Index
CHR_BOS_TAURUS_ENSEMBL_UMD_3_1 Ensembl UMD_3.1 Chromosome Fasta Files
CHR_BOS_TAURUS_ENSEMBL_UMD3_1 Ensembl UMD3.1 Chromosome Fasta Files
CHR_BOS_TAURUS_NCBI_UMD_3_1 NCBI UMD_3.1 Chromosome Fasta Files
CHR_BOS_TAURUS_NCBI_UMD_3_1_1 NCBI UMD_3.1.1 Chromosome Fasta Files
CHR_COW NCBI UMD_3.1 Chromosome Fasta Files
COW NCBI UMD_3.1 Main Directory
FAIDX_BOS_TAURUS_ENSEMBL_UMD_3_1 Ensembl UMD_3.1 Fasta Index .fai File
FAIDX_BOS_TAURUS_ENSEMBL_UMD3_1 Ensembl UMD3.1 Fasta Index .fai File
FAIDX_BOS_TAURUS_NCBI_UMD_3_1 NCBI UMD_3.1 Fasta Index .fai File
FAIDX_BOS_TAURUS_NCBI_UMD_3_1_1 NCBI UMD_3.1.1 Fasta Index .fai File
FAIDX_COW NCBI UMD_3.1 Fasta Index .fai File
GENOME_BOS_TAURUS_ENSEMBL_UMD_3_1 Ensembl UMD_3.1 Genome Fasta File
GENOME_BOS_TAURUS_ENSEMBL_UMD3_1 Ensembl UMD3.1 Genome Fasta File
GENOME_BOS_TAURUS_NCBI_UMD_3_1 NCBI UMD_3.1 Genome Fasta File
GENOME_BOS_TAURUS_NCBI_UMD_3_1_1 NCBI UMD_3.1.1 Genome Fasta File
GENOME_COW NCBI UMD_3.1 Genome Fasta File
PICARD_BOS_TAURUS_ENSEMBL_UMD_3_1 Ensembl UMD_3.1 Picard .dict File
PICARD_BOS_TAURUS_ENSEMBL_UMD3_1 Ensembl UMD3.1 Picard .dict File
PICARD_BOS_TAURUS_NCBI_UMD_3_1 NCBI UMD_3.1 Picard .dict File
PICARD_BOS_TAURUS_NCBI_UMD_3_1_1 NCBI UMD_3.1.1 Picard .dict File
PICARD_COW NCBI UMD_3.1 Picard .dict File

Caenorhabditis_elegans

Short Name Source Build Type
BOWTIE_CAENORHABDITIS_ELEGANS_NCBI_WS195 NCBI WS195 Bwa|Bowtie|Bowtie2 Index
BOWTIE_CELEGANS NCBI WS195 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_CAENORHABDITIS_ELEGANS_NCBI_WS195 NCBI WS195 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_CELEGANS NCBI WS195 Bwa|Bowtie|Bowtie2 Index
BWA_CAENORHABDITIS_ELEGANS_NCBI_WS195 NCBI WS195 Bwa|Bowtie|Bowtie2 Index
BWA_CELEGANS NCBI WS195 Bwa|Bowtie|Bowtie2 Index
CAENORHABDITIS_ELEGANS_NCBI_WS195 NCBI WS195 Main Directory
CELEGANS NCBI WS195 Main Directory
CHR_CAENORHABDITIS_ELEGANS_NCBI_WS195 NCBI WS195 Chromosome Fasta Files
CHR_CELEGANS NCBI WS195 Chromosome Fasta Files
FAIDX_CAENORHABDITIS_ELEGANS_NCBI_WS195 NCBI WS195 Fasta Index .fai File
FAIDX_CELEGANS NCBI WS195 Fasta Index .fai File
GENOME_CAENORHABDITIS_ELEGANS_NCBI_WS195 NCBI WS195 Genome Fasta File
GENOME_CELEGANS NCBI WS195 Genome Fasta File
PICARD_CAENORHABDITIS_ELEGANS_NCBI_WS195 NCBI WS195 Picard .dict File
PICARD_CELEGANS NCBI WS195 Picard .dict File

Canis_familiaris

Short Name Source Build Type
BOWTIE_CANIS_FAMILIARIS_NCBI_BUILD3_1 NCBI build3.1 Bwa|Bowtie|Bowtie2 Index
BOWTIE_DOG NCBI build3.1 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_CANIS_FAMILIARIS_NCBI_BUILD3_1 NCBI build3.1 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_DOG NCBI build3.1 Bwa|Bowtie|Bowtie2 Index
BWA_CANIS_FAMILIARIS_NCBI_BUILD3_1 NCBI build3.1 Bwa|Bowtie|Bowtie2 Index
BWA_DOG NCBI build3.1 Bwa|Bowtie|Bowtie2 Index
CANIS_FAMILIARIS_NCBI_BUILD3_1 NCBI build3.1 Main Directory
CHR_CANIS_FAMILIARIS_NCBI_BUILD3_1 NCBI build3.1 Chromosome Fasta Files
CHR_DOG NCBI build3.1 Chromosome Fasta Files
DOG NCBI build3.1 Main Directory
FAIDX_CANIS_FAMILIARIS_NCBI_BUILD3_1 NCBI build3.1 Fasta Index .fai File
FAIDX_DOG NCBI build3.1 Fasta Index .fai File
GENOME_CANIS_FAMILIARIS_NCBI_BUILD3_1 NCBI build3.1 Genome Fasta File
GENOME_DOG NCBI build3.1 Genome Fasta File
PICARD_CANIS_FAMILIARIS_NCBI_BUILD3_1 NCBI build3.1 Picard .dict File
PICARD_DOG NCBI build3.1 Picard .dict File

Danio_rerio

Short Name Source Build Type
BOWTIE_DANIO_RERIO NCBI Zv9 Bwa|Bowtie|Bowtie2 Index
BOWTIE_DANIO_RERIO_NCBI_ZV9 NCBI Zv9 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_DANIO_RERIO NCBI Zv9 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_DANIO_RERIO_NCBI_ZV9 NCBI Zv9 Bwa|Bowtie|Bowtie2 Index
BWA_DANIO_RERIO NCBI Zv9 Bwa|Bowtie|Bowtie2 Index
BWA_DANIO_RERIO_NCBI_ZV9 NCBI Zv9 Bwa|Bowtie|Bowtie2 Index
CHR_DANIO_RERIO NCBI Zv9 Chromosome Fasta Files
CHR_DANIO_RERIO_NCBI_ZV9 NCBI Zv9 Chromosome Fasta Files
DANIO_RERIO NCBI Zv9 Main Directory
DANIO_RERIO_NCBI_ZV9 NCBI Zv9 Main Directory
FAIDX_DANIO_RERIO NCBI Zv9 Fasta Index .fai File
FAIDX_DANIO_RERIO_NCBI_ZV9 NCBI Zv9 Fasta Index .fai File
GENOME_DANIO_RERIO NCBI Zv9 Genome Fasta File
GENOME_DANIO_RERIO_NCBI_ZV9 NCBI Zv9 Genome Fasta File
PICARD_DANIO_RERIO NCBI Zv9 Picard .dict File
PICARD_DANIO_RERIO_NCBI_ZV9 NCBI Zv9 Picard .dict File

Drosophila_melanogaster

Short Name Source Build Type
BOWTIE_DROSOPHILA_MELANOGASTER NCBI build5.41 Bwa|Bowtie|Bowtie2 Index
BOWTIE_DROSOPHILA_MELANOGASTER_NCBI_BUILD5_41 NCBI build5.41 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_DROSOPHILA_MELANOGASTER NCBI build5.41 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_DROSOPHILA_MELANOGASTER_NCBI_BUILD5_41 NCBI build5.41 Bwa|Bowtie|Bowtie2 Index
BWA_DROSOPHILA_MELANOGASTER NCBI build5.41 Bwa|Bowtie|Bowtie2 Index
BWA_DROSOPHILA_MELANOGASTER_NCBI_BUILD5_41 NCBI build5.41 Bwa|Bowtie|Bowtie2 Index
CHR_DROSOPHILA_MELANOGASTER NCBI build5.41 Chromosome Fasta Files
CHR_DROSOPHILA_MELANOGASTER_NCBI_BUILD5_41 NCBI build5.41 Chromosome Fasta Files
DROSOPHILA_MELANOGASTER NCBI build5.41 Main Directory
DROSOPHILA_MELANOGASTER_NCBI_BUILD5_41 NCBI build5.41 Main Directory
FAIDX_DROSOPHILA_MELANOGASTER NCBI build5.41 Fasta Index .fai File
FAIDX_DROSOPHILA_MELANOGASTER_NCBI_BUILD5_41 NCBI build5.41 Fasta Index .fai File
GENOME_DROSOPHILA_MELANOGASTER NCBI build5.41 Genome Fasta File
GENOME_DROSOPHILA_MELANOGASTER_NCBI_BUILD5_41 NCBI build5.41 Genome Fasta File
PICARD_DROSOPHILA_MELANOGASTER NCBI build5.41 Picard .dict File
PICARD_DROSOPHILA_MELANOGASTER_NCBI_BUILD5_41 NCBI build5.41 Picard .dict File

Enterobacteriophage_lambda

Short Name Source Build Type
BOWTIE_ELAMBDA NCBI 1993-04-28 Bwa|Bowtie|Bowtie2 Index
BOWTIE_ENTEROBACTERIOPHAGE_LAMBDA_NCBI_1993_04_28 NCBI 1993-04-28 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_ELAMBDA NCBI 1993-04-28 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_ENTEROBACTERIOPHAGE_LAMBDA_NCBI_1993_04_28 NCBI 1993-04-28 Bwa|Bowtie|Bowtie2 Index
BWA_ELAMBDA NCBI 1993-04-28 Bwa|Bowtie|Bowtie2 Index
BWA_ENTEROBACTERIOPHAGE_LAMBDA_NCBI_1993_04_28 NCBI 1993-04-28 Bwa|Bowtie|Bowtie2 Index
CHR_ELAMBDA NCBI 1993-04-28 Chromosome Fasta Files
CHR_ENTEROBACTERIOPHAGE_LAMBDA_NCBI_1993_04_28 NCBI 1993-04-28 Chromosome Fasta Files
ELAMBDA NCBI 1993-04-28 Main Directory
ENTEROBACTERIOPHAGE_LAMBDA_NCBI_1993_04_28 NCBI 1993-04-28 Main Directory
FAIDX_ELAMBDA NCBI 1993-04-28 Fasta Index .fai File
FAIDX_ENTEROBACTERIOPHAGE_LAMBDA_NCBI_1993_04_28 NCBI 1993-04-28 Fasta Index .fai File
GENOME_ELAMBDA NCBI 1993-04-28 Genome Fasta File
GENOME_ENTEROBACTERIOPHAGE_LAMBDA_NCBI_1993_04_28 NCBI 1993-04-28 Genome Fasta File
PICARD_ELAMBDA NCBI 1993-04-28 Picard .dict File
PICARD_ENTEROBACTERIOPHAGE_LAMBDA_NCBI_1993_04_28 NCBI 1993-04-28 Picard .dict File

Equus_caballus

Short Name Source Build Type
BOWTIE_EQUUS_CABALLUS_NCBI_EQUCAB2_0 NCBI EquCab2.0 Bwa|Bowtie|Bowtie2 Index
BOWTIE_HORSE NCBI EquCab2.0 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_EQUUS_CABALLUS_NCBI_EQUCAB2_0 NCBI EquCab2.0 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_HORSE NCBI EquCab2.0 Bwa|Bowtie|Bowtie2 Index
BWA_EQUUS_CABALLUS_NCBI_EQUCAB2_0 NCBI EquCab2.0 Bwa|Bowtie|Bowtie2 Index
BWA_HORSE NCBI EquCab2.0 Bwa|Bowtie|Bowtie2 Index
CHR_EQUUS_CABALLUS_NCBI_EQUCAB2_0 NCBI EquCab2.0 Chromosome Fasta Files
CHR_HORSE NCBI EquCab2.0 Chromosome Fasta Files
EQUUS_CABALLUS_NCBI_EQUCAB2_0 NCBI EquCab2.0 Main Directory
FAIDX_EQUUS_CABALLUS_NCBI_EQUCAB2_0 NCBI EquCab2.0 Fasta Index .fai File
FAIDX_HORSE NCBI EquCab2.0 Fasta Index .fai File
GENOME_EQUUS_CABALLUS_NCBI_EQUCAB2_0 NCBI EquCab2.0 Genome Fasta File
GENOME_HORSE NCBI EquCab2.0 Genome Fasta File
HORSE NCBI EquCab2.0 Main Directory
PICARD_EQUUS_CABALLUS_NCBI_EQUCAB2_0 NCBI EquCab2.0 Picard .dict File
PICARD_HORSE NCBI EquCab2.0 Picard .dict File

Escherichia_coli_K_12_DH10B

Short Name Source Build Type
BOWTIE_ESCHERICHIA_COLI_K_12_DH10B NCBI 2008-03-17 Bwa|Bowtie|Bowtie2 Index
BOWTIE_ESCHERICHIA_COLI_K_12_DH10B_NCBI_2008_03_17 NCBI 2008-03-17 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_ESCHERICHIA_COLI_K_12_DH10B NCBI 2008-03-17 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_ESCHERICHIA_COLI_K_12_DH10B_NCBI_2008_03_17 NCBI 2008-03-17 Bwa|Bowtie|Bowtie2 Index
BWA_ESCHERICHIA_COLI_K_12_DH10B NCBI 2008-03-17 Bwa|Bowtie|Bowtie2 Index
BWA_ESCHERICHIA_COLI_K_12_DH10B_NCBI_2008_03_17 NCBI 2008-03-17 Bwa|Bowtie|Bowtie2 Index
CHR_ESCHERICHIA_COLI_K_12_DH10B NCBI 2008-03-17 Chromosome Fasta Files
CHR_ESCHERICHIA_COLI_K_12_DH10B_NCBI_2008_03_17 NCBI 2008-03-17 Chromosome Fasta Files
ESCHERICHIA_COLI_K_12_DH10B NCBI 2008-03-17 Main Directory
ESCHERICHIA_COLI_K_12_DH10B_NCBI_2008_03_17 NCBI 2008-03-17 Main Directory
FAIDX_ESCHERICHIA_COLI_K_12_DH10B NCBI 2008-03-17 Fasta Index .fai File
FAIDX_ESCHERICHIA_COLI_K_12_DH10B_NCBI_2008_03_17 NCBI 2008-03-17 Fasta Index .fai File
GENOME_ESCHERICHIA_COLI_K_12_DH10B NCBI 2008-03-17 Genome Fasta File
GENOME_ESCHERICHIA_COLI_K_12_DH10B_NCBI_2008_03_17 NCBI 2008-03-17 Genome Fasta File
PICARD_ESCHERICHIA_COLI_K_12_DH10B NCBI 2008-03-17 Picard .dict File
PICARD_ESCHERICHIA_COLI_K_12_DH10B_NCBI_2008_03_17 NCBI 2008-03-17 Picard .dict File

Escherichia_coli_K_12_MG1655

Short Name Source Build Type
BOWTIE_ESCHERICHIA_COLI_K_12_MG1655 NCBI 2001-10-15 Bwa|Bowtie|Bowtie2 Index
BOWTIE_ESCHERICHIA_COLI_K_12_MG1655_NCBI_2001_10_15 NCBI 2001-10-15 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_ESCHERICHIA_COLI_K_12_MG1655 NCBI 2001-10-15 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_ESCHERICHIA_COLI_K_12_MG1655_NCBI_2001_10_15 NCBI 2001-10-15 Bwa|Bowtie|Bowtie2 Index
BWA_ESCHERICHIA_COLI_K_12_MG1655 NCBI 2001-10-15 Bwa|Bowtie|Bowtie2 Index
BWA_ESCHERICHIA_COLI_K_12_MG1655_NCBI_2001_10_15 NCBI 2001-10-15 Bwa|Bowtie|Bowtie2 Index
CHR_ESCHERICHIA_COLI_K_12_MG1655 NCBI 2001-10-15 Chromosome Fasta Files
CHR_ESCHERICHIA_COLI_K_12_MG1655_NCBI_2001_10_15 NCBI 2001-10-15 Chromosome Fasta Files
ESCHERICHIA_COLI_K_12_MG1655 NCBI 2001-10-15 Main Directory
ESCHERICHIA_COLI_K_12_MG1655_NCBI_2001_10_15 NCBI 2001-10-15 Main Directory
FAIDX_ESCHERICHIA_COLI_K_12_MG1655 NCBI 2001-10-15 Fasta Index .fai File
FAIDX_ESCHERICHIA_COLI_K_12_MG1655_NCBI_2001_10_15 NCBI 2001-10-15 Fasta Index .fai File
GENOME_ESCHERICHIA_COLI_K_12_MG1655 NCBI 2001-10-15 Genome Fasta File
GENOME_ESCHERICHIA_COLI_K_12_MG1655_NCBI_2001_10_15 NCBI 2001-10-15 Genome Fasta File
PICARD_ESCHERICHIA_COLI_K_12_MG1655 NCBI 2001-10-15 Picard .dict File
PICARD_ESCHERICHIA_COLI_K_12_MG1655_NCBI_2001_10_15 NCBI 2001-10-15 Picard .dict File

Gallus_gallus

Short Name Source Build Type
BOWTIE_GALLUS_GALLUS NCBI build3.1 Bwa|Bowtie|Bowtie2 Index
BOWTIE_GALLUS_GALLUS_NCBI_BUILD3_1 NCBI build3.1 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_GALLUS_GALLUS NCBI build3.1 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_GALLUS_GALLUS_NCBI_BUILD3_1 NCBI build3.1 Bwa|Bowtie|Bowtie2 Index
BWA_GALLUS_GALLUS NCBI build3.1 Bwa|Bowtie|Bowtie2 Index
BWA_GALLUS_GALLUS_NCBI_BUILD3_1 NCBI build3.1 Bwa|Bowtie|Bowtie2 Index
CHR_GALLUS_GALLUS NCBI build3.1 Chromosome Fasta Files
CHR_GALLUS_GALLUS_NCBI_BUILD3_1 NCBI build3.1 Chromosome Fasta Files
FAIDX_GALLUS_GALLUS NCBI build3.1 Fasta Index .fai File
FAIDX_GALLUS_GALLUS_NCBI_BUILD3_1 NCBI build3.1 Fasta Index .fai File
GALLUS_GALLUS NCBI build3.1 Main Directory
GALLUS_GALLUS_NCBI_BUILD3_1 NCBI build3.1 Main Directory
GENOME_GALLUS_GALLUS NCBI build3.1 Genome Fasta File
GENOME_GALLUS_GALLUS_NCBI_BUILD3_1 NCBI build3.1 Genome Fasta File
PICARD_GALLUS_GALLUS NCBI build3.1 Picard .dict File
PICARD_GALLUS_GALLUS_NCBI_BUILD3_1 NCBI build3.1 Picard .dict File

Glycine_max

Short Name Source Build Type
BOWTIE_GLYCINE_MAX_ENSEMBL_GM01 Ensembl Gm01 Bwa|Bowtie|Bowtie2 Index
BOWTIE_SOYBEAN Ensembl Gm01 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_GLYCINE_MAX_ENSEMBL_GM01 Ensembl Gm01 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_SOYBEAN Ensembl Gm01 Bwa|Bowtie|Bowtie2 Index
BWA_GLYCINE_MAX_ENSEMBL_GM01 Ensembl Gm01 Bwa|Bowtie|Bowtie2 Index
BWA_SOYBEAN Ensembl Gm01 Bwa|Bowtie|Bowtie2 Index
CHR_GLYCINE_MAX_ENSEMBL_GM01 Ensembl Gm01 Chromosome Fasta Files
CHR_SOYBEAN Ensembl Gm01 Chromosome Fasta Files
FAIDX_GLYCINE_MAX_ENSEMBL_GM01 Ensembl Gm01 Fasta Index .fai File
FAIDX_SOYBEAN Ensembl Gm01 Fasta Index .fai File
GENOME_GLYCINE_MAX_ENSEMBL_GM01 Ensembl Gm01 Genome Fasta File
GENOME_SOYBEAN Ensembl Gm01 Genome Fasta File
GLYCINE_MAX_ENSEMBL_GM01 Ensembl Gm01 Main Directory
PICARD_GLYCINE_MAX_ENSEMBL_GM01 Ensembl Gm01 Picard .dict File
PICARD_SOYBEAN Ensembl Gm01 Picard .dict File
SOYBEAN Ensembl Gm01 Main Directory

Homo_sapiens

Short Name Source Build Type
BOWTIE_HOMO_SAPIENS_NCBI_BUILD37_2 NCBI build37.2 Bwa|Bowtie|Bowtie2 Index
BOWTIE_HUMAN NCBI build37.2 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_HOMO_SAPIENS_NCBI_BUILD37_2 NCBI build37.2 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_HUMAN NCBI build37.2 Bwa|Bowtie|Bowtie2 Index
BWA_HOMO_SAPIENS_NCBI_BUILD37_2 NCBI build37.2 Bwa|Bowtie|Bowtie2 Index
BWA_HUMAN NCBI build37.2 Bwa|Bowtie|Bowtie2 Index
CHR_HOMO_SAPIENS_NCBI_BUILD37_2 NCBI build37.2 Chromosome Fasta Files
CHR_HUMAN NCBI build37.2 Chromosome Fasta Files
FAIDX_HOMO_SAPIENS_NCBI_BUILD37_2 NCBI build37.2 Fasta Index .fai File
FAIDX_HUMAN NCBI build37.2 Fasta Index .fai File
GENOME_HOMO_SAPIENS_NCBI_BUILD37_2 NCBI build37.2 Genome Fasta File
GENOME_HUMAN NCBI build37.2 Genome Fasta File
HOMO_SAPIENS_NCBI_BUILD37_2 NCBI build37.2 Main Directory
HUMAN NCBI build37.2 Main Directory
PICARD_HOMO_SAPIENS_NCBI_BUILD37_2 NCBI build37.2 Picard .dict File
PICARD_HUMAN NCBI build37.2 Picard .dict File

Macaca_mulatta

Short Name Source Build Type
BOWTIE_MACACA_MULATTA Ensembl Mmul_1 Bwa|Bowtie|Bowtie2 Index
BOWTIE_MACACA_MULATTA_ENSEMBL_MMUL_1 Ensembl Mmul_1 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_MACACA_MULATTA Ensembl Mmul_1 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_MACACA_MULATTA_ENSEMBL_MMUL_1 Ensembl Mmul_1 Bwa|Bowtie|Bowtie2 Index
BWA_MACACA_MULATTA Ensembl Mmul_1 Bwa|Bowtie|Bowtie2 Index
BWA_MACACA_MULATTA_ENSEMBL_MMUL_1 Ensembl Mmul_1 Bwa|Bowtie|Bowtie2 Index
CHR_MACACA_MULATTA Ensembl Mmul_1 Chromosome Fasta Files
CHR_MACACA_MULATTA_ENSEMBL_MMUL_1 Ensembl Mmul_1 Chromosome Fasta Files
FAIDX_MACACA_MULATTA Ensembl Mmul_1 Fasta Index .fai File
FAIDX_MACACA_MULATTA_ENSEMBL_MMUL_1 Ensembl Mmul_1 Fasta Index .fai File
GENOME_MACACA_MULATTA Ensembl Mmul_1 Genome Fasta File
GENOME_MACACA_MULATTA_ENSEMBL_MMUL_1 Ensembl Mmul_1 Genome Fasta File
MACACA_MULATTA Ensembl Mmul_1 Main Directory
MACACA_MULATTA_ENSEMBL_MMUL_1 Ensembl Mmul_1 Main Directory
PICARD_MACACA_MULATTA Ensembl Mmul_1 Picard .dict File
PICARD_MACACA_MULATTA_ENSEMBL_MMUL_1 Ensembl Mmul_1 Picard .dict File

Mus_musculus

Short Name Source Build Type
BOWTIE_MOUSE NCBI GRCm38 Bwa|Bowtie|Bowtie2 Index
BOWTIE_MUS_MUSCULUS_NCBI_GRCM38 NCBI GRCm38 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_MOUSE NCBI GRCm38 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_MUS_MUSCULUS_NCBI_GRCM38 NCBI GRCm38 Bwa|Bowtie|Bowtie2 Index
BWA_MOUSE NCBI GRCm38 Bwa|Bowtie|Bowtie2 Index
BWA_MUS_MUSCULUS_NCBI_GRCM38 NCBI GRCm38 Bwa|Bowtie|Bowtie2 Index
CHR_MOUSE NCBI GRCm38 Chromosome Fasta Files
CHR_MUS_MUSCULUS_NCBI_GRCM38 NCBI GRCm38 Chromosome Fasta Files
FAIDX_MOUSE NCBI GRCm38 Fasta Index .fai File
FAIDX_MUS_MUSCULUS_NCBI_GRCM38 NCBI GRCm38 Fasta Index .fai File
GENOME_MOUSE NCBI GRCm38 Genome Fasta File
GENOME_MUS_MUSCULUS_NCBI_GRCM38 NCBI GRCm38 Genome Fasta File
MOUSE NCBI GRCm38 Main Directory
MUS_MUSCULUS_NCBI_GRCM38 NCBI GRCm38 Main Directory
PICARD_MOUSE NCBI GRCm38 Picard .dict File
PICARD_MUS_MUSCULUS_NCBI_GRCM38 NCBI GRCm38 Picard .dict File

Mycobacterium_tuberculosis_H37RV

Short Name Source Build Type
BOWTIE_MYCOBACTERIUM_TUBERCULOSIS_H37RV NCBI 2001-09-07 Bwa|Bowtie|Bowtie2 Index
BOWTIE_MYCOBACTERIUM_TUBERCULOSIS_H37RV_NCBI_2001_09_07 NCBI 2001-09-07 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_MYCOBACTERIUM_TUBERCULOSIS_H37RV NCBI 2001-09-07 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_MYCOBACTERIUM_TUBERCULOSIS_H37RV_NCBI_2001_09_07 NCBI 2001-09-07 Bwa|Bowtie|Bowtie2 Index
BWA_MYCOBACTERIUM_TUBERCULOSIS_H37RV NCBI 2001-09-07 Bwa|Bowtie|Bowtie2 Index
BWA_MYCOBACTERIUM_TUBERCULOSIS_H37RV_NCBI_2001_09_07 NCBI 2001-09-07 Bwa|Bowtie|Bowtie2 Index
CHR_MYCOBACTERIUM_TUBERCULOSIS_H37RV NCBI 2001-09-07 Chromosome Fasta Files
CHR_MYCOBACTERIUM_TUBERCULOSIS_H37RV_NCBI_2001_09_07 NCBI 2001-09-07 Chromosome Fasta Files
FAIDX_MYCOBACTERIUM_TUBERCULOSIS_H37RV NCBI 2001-09-07 Fasta Index .fai File
FAIDX_MYCOBACTERIUM_TUBERCULOSIS_H37RV_NCBI_2001_09_07 NCBI 2001-09-07 Fasta Index .fai File
GENOME_MYCOBACTERIUM_TUBERCULOSIS_H37RV NCBI 2001-09-07 Genome Fasta File
GENOME_MYCOBACTERIUM_TUBERCULOSIS_H37RV_NCBI_2001_09_07 NCBI 2001-09-07 Genome Fasta File
MYCOBACTERIUM_TUBERCULOSIS_H37RV NCBI 2001-09-07 Main Directory
MYCOBACTERIUM_TUBERCULOSIS_H37RV_NCBI_2001_09_07 NCBI 2001-09-07 Main Directory
PICARD_MYCOBACTERIUM_TUBERCULOSIS_H37RV NCBI 2001-09-07 Picard .dict File
PICARD_MYCOBACTERIUM_TUBERCULOSIS_H37RV_NCBI_2001_09_07 NCBI 2001-09-07 Picard .dict File

Oryza_sativa_japonica

Short Name Source Build Type
BOWTIE_ORYZA_SATIVA_JAPONICA_ENSEMBL_IRGSP_1_0 Ensembl IRGSP-1.0 Bwa|Bowtie|Bowtie2 Index
BOWTIE_RICE Ensembl IRGSP-1.0 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_ORYZA_SATIVA_JAPONICA_ENSEMBL_IRGSP_1_0 Ensembl IRGSP-1.0 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_RICE Ensembl IRGSP-1.0 Bwa|Bowtie|Bowtie2 Index
BWA_ORYZA_SATIVA_JAPONICA_ENSEMBL_IRGSP_1_0 Ensembl IRGSP-1.0 Bwa|Bowtie|Bowtie2 Index
BWA_RICE Ensembl IRGSP-1.0 Bwa|Bowtie|Bowtie2 Index
CHR_ORYZA_SATIVA_JAPONICA_ENSEMBL_IRGSP_1_0 Ensembl IRGSP-1.0 Chromosome Fasta Files
CHR_RICE Ensembl IRGSP-1.0 Chromosome Fasta Files
FAIDX_ORYZA_SATIVA_JAPONICA_ENSEMBL_IRGSP_1_0 Ensembl IRGSP-1.0 Fasta Index .fai File
FAIDX_RICE Ensembl IRGSP-1.0 Fasta Index .fai File
GENOME_ORYZA_SATIVA_JAPONICA_ENSEMBL_IRGSP_1_0 Ensembl IRGSP-1.0 Genome Fasta File
GENOME_RICE Ensembl IRGSP-1.0 Genome Fasta File
ORYZA_SATIVA_JAPONICA_ENSEMBL_IRGSP_1_0 Ensembl IRGSP-1.0 Main Directory
PICARD_ORYZA_SATIVA_JAPONICA_ENSEMBL_IRGSP_1_0 Ensembl IRGSP-1.0 Picard .dict File
PICARD_RICE Ensembl IRGSP-1.0 Picard .dict File
RICE Ensembl IRGSP-1.0 Main Directory

Pan_troglodytes

Short Name Source Build Type
BOWTIE_PAN_TROGLODYTES NCBI build3.1 Bwa|Bowtie|Bowtie2 Index
BOWTIE_PAN_TROGLODYTES_NCBI_BUILD3_1 NCBI build3.1 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_PAN_TROGLODYTES NCBI build3.1 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_PAN_TROGLODYTES_NCBI_BUILD3_1 NCBI build3.1 Bwa|Bowtie|Bowtie2 Index
BWA_PAN_TROGLODYTES NCBI build3.1 Bwa|Bowtie|Bowtie2 Index
BWA_PAN_TROGLODYTES_NCBI_BUILD3_1 NCBI build3.1 Bwa|Bowtie|Bowtie2 Index
CHR_PAN_TROGLODYTES NCBI build3.1 Chromosome Fasta Files
CHR_PAN_TROGLODYTES_NCBI_BUILD3_1 NCBI build3.1 Chromosome Fasta Files
FAIDX_PAN_TROGLODYTES NCBI build3.1 Fasta Index .fai File
FAIDX_PAN_TROGLODYTES_NCBI_BUILD3_1 NCBI build3.1 Fasta Index .fai File
GENOME_PAN_TROGLODYTES NCBI build3.1 Genome Fasta File
GENOME_PAN_TROGLODYTES_NCBI_BUILD3_1 NCBI build3.1 Genome Fasta File
PAN_TROGLODYTES NCBI build3.1 Main Directory
PAN_TROGLODYTES_NCBI_BUILD3_1 NCBI build3.1 Main Directory
PICARD_PAN_TROGLODYTES NCBI build3.1 Picard .dict File
PICARD_PAN_TROGLODYTES_NCBI_BUILD3_1 NCBI build3.1 Picard .dict File

PhiX

Short Name Source Build Type
BOWTIE_PHIX Illumina RTA Bwa|Bowtie|Bowtie2 Index
BOWTIE_PHIX_ILLUMINA_RTA Illumina RTA Bwa|Bowtie|Bowtie2 Index
BOWTIE2_PHIX Illumina RTA Bwa|Bowtie|Bowtie2 Index
BOWTIE2_PHIX_ILLUMINA_RTA Illumina RTA Bwa|Bowtie|Bowtie2 Index
BWA_PHIX Illumina RTA Bwa|Bowtie|Bowtie2 Index
BWA_PHIX_ILLUMINA_RTA Illumina RTA Bwa|Bowtie|Bowtie2 Index
CHR_PHIX Illumina RTA Chromosome Fasta Files
CHR_PHIX_ILLUMINA_RTA Illumina RTA Chromosome Fasta Files
FAIDX_PHIX Illumina RTA Fasta Index .fai File
FAIDX_PHIX_ILLUMINA_RTA Illumina RTA Fasta Index .fai File
GENOME_PHIX Illumina RTA Genome Fasta File
GENOME_PHIX_ILLUMINA_RTA Illumina RTA Genome Fasta File
PHIX Illumina RTA Main Directory
PHIX_ILLUMINA_RTA Illumina RTA Main Directory
PICARD_PHIX Illumina RTA Picard .dict File
PICARD_PHIX_ILLUMINA_RTA Illumina RTA Picard .dict File

Pseudomonas_aeruginosa_PAO1

Short Name Source Build Type
BOWTIE_PSEUDOMONAS_AERUGINOSA_PAO1 NCBI 2000-09-13 Bwa|Bowtie|Bowtie2 Index
BOWTIE_PSEUDOMONAS_AERUGINOSA_PAO1_NCBI_2000_09_13 NCBI 2000-09-13 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_PSEUDOMONAS_AERUGINOSA_PAO1 NCBI 2000-09-13 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_PSEUDOMONAS_AERUGINOSA_PAO1_NCBI_2000_09_13 NCBI 2000-09-13 Bwa|Bowtie|Bowtie2 Index
BWA_PSEUDOMONAS_AERUGINOSA_PAO1 NCBI 2000-09-13 Bwa|Bowtie|Bowtie2 Index
BWA_PSEUDOMONAS_AERUGINOSA_PAO1_NCBI_2000_09_13 NCBI 2000-09-13 Bwa|Bowtie|Bowtie2 Index
CHR_PSEUDOMONAS_AERUGINOSA_PAO1 NCBI 2000-09-13 Chromosome Fasta Files
CHR_PSEUDOMONAS_AERUGINOSA_PAO1_NCBI_2000_09_13 NCBI 2000-09-13 Chromosome Fasta Files
FAIDX_PSEUDOMONAS_AERUGINOSA_PAO1 NCBI 2000-09-13 Fasta Index .fai File
FAIDX_PSEUDOMONAS_AERUGINOSA_PAO1_NCBI_2000_09_13 NCBI 2000-09-13 Fasta Index .fai File
GENOME_PSEUDOMONAS_AERUGINOSA_PAO1 NCBI 2000-09-13 Genome Fasta File
GENOME_PSEUDOMONAS_AERUGINOSA_PAO1_NCBI_2000_09_13 NCBI 2000-09-13 Genome Fasta File
PICARD_PSEUDOMONAS_AERUGINOSA_PAO1 NCBI 2000-09-13 Picard .dict File
PICARD_PSEUDOMONAS_AERUGINOSA_PAO1_NCBI_2000_09_13 NCBI 2000-09-13 Picard .dict File
PSEUDOMONAS_AERUGINOSA_PAO1 NCBI 2000-09-13 Main Directory
PSEUDOMONAS_AERUGINOSA_PAO1_NCBI_2000_09_13 NCBI 2000-09-13 Main Directory

Rattus_norvegicus

Short Name Source Build Type
BOWTIE_RAT NCBI Rnor_5.0 Bwa|Bowtie|Bowtie2 Index
BOWTIE_RATTUS_NORVEGICUS_NCBI_RNOR_5_0 NCBI Rnor_5.0 Bwa|Bowtie|Bowtie2 Index
BOWTIE_RATTUS_NORVEGICUS_NCBI_RNOR_6_0 NCBI Rnor_6.0 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_RAT NCBI Rnor_5.0 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_RATTUS_NORVEGICUS_NCBI_RNOR_5_0 NCBI Rnor_5.0 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_RATTUS_NORVEGICUS_NCBI_RNOR_6_0 NCBI Rnor_6.0 Bwa|Bowtie|Bowtie2 Index
BWA_RAT NCBI Rnor_5.0 Bwa|Bowtie|Bowtie2 Index
BWA_RATTUS_NORVEGICUS_NCBI_RNOR_5_0 NCBI Rnor_5.0 Bwa|Bowtie|Bowtie2 Index
BWA_RATTUS_NORVEGICUS_NCBI_RNOR_6_0 NCBI Rnor_6.0 Bwa|Bowtie|Bowtie2 Index
CHR_RAT NCBI Rnor_5.0 Chromosome Fasta Files
CHR_RATTUS_NORVEGICUS_NCBI_RNOR_5_0 NCBI Rnor_5.0 Chromosome Fasta Files
CHR_RATTUS_NORVEGICUS_NCBI_RNOR_6_0 NCBI Rnor_6.0 Chromosome Fasta Files
FAIDX_RAT NCBI Rnor_5.0 Fasta Index .fai File
FAIDX_RATTUS_NORVEGICUS_NCBI_RNOR_5_0 NCBI Rnor_5.0 Fasta Index .fai File
FAIDX_RATTUS_NORVEGICUS_NCBI_RNOR_6_0 NCBI Rnor_6.0 Fasta Index .fai File
GENOME_RAT NCBI Rnor_5.0 Genome Fasta File
GENOME_RATTUS_NORVEGICUS_NCBI_RNOR_5_0 NCBI Rnor_5.0 Genome Fasta File
GENOME_RATTUS_NORVEGICUS_NCBI_RNOR_6_0 NCBI Rnor_6.0 Genome Fasta File
PICARD_RAT NCBI Rnor_5.0 Picard .dict File
PICARD_RATTUS_NORVEGICUS_NCBI_RNOR_5_0 NCBI Rnor_5.0 Picard .dict File
PICARD_RATTUS_NORVEGICUS_NCBI_RNOR_6_0 NCBI Rnor_6.0 Picard .dict File
RAT NCBI Rnor_5.0 Main Directory
RATTUS_NORVEGICUS_NCBI_RNOR_5_0 NCBI Rnor_5.0 Main Directory
RATTUS_NORVEGICUS_NCBI_RNOR_6_0 NCBI Rnor_6.0 Main Directory

Saccharomyces_cerevisiae

Short Name Source Build Type
BOWTIE_SACCHAROMYCES_CEREVISIAE_NCBI_BUILD3_1 NCBI build3.1 Bwa|Bowtie|Bowtie2 Index
BOWTIE_YEAST NCBI build3.1 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_SACCHAROMYCES_CEREVISIAE_NCBI_BUILD3_1 NCBI build3.1 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_YEAST NCBI build3.1 Bwa|Bowtie|Bowtie2 Index
BWA_SACCHAROMYCES_CEREVISIAE_NCBI_BUILD3_1 NCBI build3.1 Bwa|Bowtie|Bowtie2 Index
BWA_YEAST NCBI build3.1 Bwa|Bowtie|Bowtie2 Index
CHR_SACCHAROMYCES_CEREVISIAE_NCBI_BUILD3_1 NCBI build3.1 Chromosome Fasta Files
CHR_YEAST NCBI build3.1 Chromosome Fasta Files
FAIDX_SACCHAROMYCES_CEREVISIAE_NCBI_BUILD3_1 NCBI build3.1 Fasta Index .fai File
FAIDX_YEAST NCBI build3.1 Fasta Index .fai File
GENOME_SACCHAROMYCES_CEREVISIAE_NCBI_BUILD3_1 NCBI build3.1 Genome Fasta File
GENOME_YEAST NCBI build3.1 Genome Fasta File
PICARD_SACCHAROMYCES_CEREVISIAE_NCBI_BUILD3_1 NCBI build3.1 Picard .dict File
PICARD_YEAST NCBI build3.1 Picard .dict File
SACCHAROMYCES_CEREVISIAE_NCBI_BUILD3_1 NCBI build3.1 Main Directory
YEAST NCBI build3.1 Main Directory

Sorghum_bicolor

Short Name Source Build Type
BOWTIE_SORGHUM Ensembl Sbi1 Bwa|Bowtie|Bowtie2 Index
BOWTIE_SORGHUM_BICOLOR_ENSEMBL_SBI1 Ensembl Sbi1 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_SORGHUM Ensembl Sbi1 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_SORGHUM_BICOLOR_ENSEMBL_SBI1 Ensembl Sbi1 Bwa|Bowtie|Bowtie2 Index
BWA_SORGHUM Ensembl Sbi1 Bwa|Bowtie|Bowtie2 Index
BWA_SORGHUM_BICOLOR_ENSEMBL_SBI1 Ensembl Sbi1 Bwa|Bowtie|Bowtie2 Index
CHR_SORGHUM Ensembl Sbi1 Chromosome Fasta Files
CHR_SORGHUM_BICOLOR_ENSEMBL_SBI1 Ensembl Sbi1 Chromosome Fasta Files
FAIDX_SORGHUM Ensembl Sbi1 Fasta Index .fai File
FAIDX_SORGHUM_BICOLOR_ENSEMBL_SBI1 Ensembl Sbi1 Fasta Index .fai File
GENOME_SORGHUM Ensembl Sbi1 Genome Fasta File
GENOME_SORGHUM_BICOLOR_ENSEMBL_SBI1 Ensembl Sbi1 Genome Fasta File
PICARD_SORGHUM Ensembl Sbi1 Picard .dict File
PICARD_SORGHUM_BICOLOR_ENSEMBL_SBI1 Ensembl Sbi1 Picard .dict File
SORGHUM Ensembl Sbi1 Main Directory
SORGHUM_BICOLOR_ENSEMBL_SBI1 Ensembl Sbi1 Main Directory

Staphylococcus_aureus_NCTC_8325

Short Name Source Build Type
BOWTIE_STAPHYLOCOCCUS_AUREUS_NCTC_8325 NCBI 2006-02-13 Bwa|Bowtie|Bowtie2 Index
BOWTIE_STAPHYLOCOCCUS_AUREUS_NCTC_8325_NCBI_2006_02_13 NCBI 2006-02-13 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_STAPHYLOCOCCUS_AUREUS_NCTC_8325 NCBI 2006-02-13 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_STAPHYLOCOCCUS_AUREUS_NCTC_8325_NCBI_2006_02_13 NCBI 2006-02-13 Bwa|Bowtie|Bowtie2 Index
BWA_STAPHYLOCOCCUS_AUREUS_NCTC_8325 NCBI 2006-02-13 Bwa|Bowtie|Bowtie2 Index
BWA_STAPHYLOCOCCUS_AUREUS_NCTC_8325_NCBI_2006_02_13 NCBI 2006-02-13 Bwa|Bowtie|Bowtie2 Index
CHR_STAPHYLOCOCCUS_AUREUS_NCTC_8325 NCBI 2006-02-13 Chromosome Fasta Files
CHR_STAPHYLOCOCCUS_AUREUS_NCTC_8325_NCBI_2006_02_13 NCBI 2006-02-13 Chromosome Fasta Files
FAIDX_STAPHYLOCOCCUS_AUREUS_NCTC_8325 NCBI 2006-02-13 Fasta Index .fai File
FAIDX_STAPHYLOCOCCUS_AUREUS_NCTC_8325_NCBI_2006_02_13 NCBI 2006-02-13 Fasta Index .fai File
GENOME_STAPHYLOCOCCUS_AUREUS_NCTC_8325 NCBI 2006-02-13 Genome Fasta File
GENOME_STAPHYLOCOCCUS_AUREUS_NCTC_8325_NCBI_2006_02_13 NCBI 2006-02-13 Genome Fasta File
PICARD_STAPHYLOCOCCUS_AUREUS_NCTC_8325 NCBI 2006-02-13 Picard .dict File
PICARD_STAPHYLOCOCCUS_AUREUS_NCTC_8325_NCBI_2006_02_13 NCBI 2006-02-13 Picard .dict File
STAPHYLOCOCCUS_AUREUS_NCTC_8325 NCBI 2006-02-13 Main Directory
STAPHYLOCOCCUS_AUREUS_NCTC_8325_NCBI_2006_02_13 NCBI 2006-02-13 Main Directory

Sus_scrofa

Short Name Source Build Type
BOWTIE_PIG NCBI Sscrofa10.2 Bwa|Bowtie|Bowtie2 Index
BOWTIE_SUS_SCROFA_NCBI_SSCROFA10_2 NCBI Sscrofa10.2 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_PIG NCBI Sscrofa10.2 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_SUS_SCROFA_NCBI_SSCROFA10_2 NCBI Sscrofa10.2 Bwa|Bowtie|Bowtie2 Index
BWA_PIG NCBI Sscrofa10.2 Bwa|Bowtie|Bowtie2 Index
BWA_SUS_SCROFA_NCBI_SSCROFA10_2 NCBI Sscrofa10.2 Bwa|Bowtie|Bowtie2 Index
CHR_PIG NCBI Sscrofa10.2 Chromosome Fasta Files
CHR_SUS_SCROFA_NCBI_SSCROFA10_2 NCBI Sscrofa10.2 Chromosome Fasta Files
FAIDX_PIG NCBI Sscrofa10.2 Fasta Index .fai File
FAIDX_SUS_SCROFA_NCBI_SSCROFA10_2 NCBI Sscrofa10.2 Fasta Index .fai File
GENOME_PIG NCBI Sscrofa10.2 Genome Fasta File
GENOME_SUS_SCROFA_NCBI_SSCROFA10_2 NCBI Sscrofa10.2 Genome Fasta File
PICARD_PIG NCBI Sscrofa10.2 Picard .dict File
PICARD_SUS_SCROFA_NCBI_SSCROFA10_2 NCBI Sscrofa10.2 Picard .dict File
PIG NCBI Sscrofa10.2 Main Directory
SUS_SCROFA_NCBI_SSCROFA10_2 NCBI Sscrofa10.2 Main Directory

Zea_mays

Short Name Source Build Type
BOWTIE_MAIZE Ensembl AGPv3 Bwa|Bowtie|Bowtie2 Index
BOWTIE_ZEA_MAYS_ENSEMBL_AGPV3 Ensembl AGPv3 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_MAIZE Ensembl AGPv3 Bwa|Bowtie|Bowtie2 Index
BOWTIE2_ZEA_MAYS_ENSEMBL_AGPV3 Ensembl AGPv3 Bwa|Bowtie|Bowtie2 Index
BWA_MAIZE Ensembl AGPv3 Bwa|Bowtie|Bowtie2 Index
BWA_ZEA_MAYS_ENSEMBL_AGPV3 Ensembl AGPv3 Bwa|Bowtie|Bowtie2 Index
CHR_MAIZE Ensembl AGPv3 Chromosome Fasta Files
CHR_ZEA_MAYS_ENSEMBL_AGPV3 Ensembl AGPv3 Chromosome Fasta Files
FAIDX_MAIZE Ensembl AGPv3 Fasta Index .fai File
FAIDX_ZEA_MAYS_ENSEMBL_AGPV3 Ensembl AGPv3 Fasta Index .fai File
GENOME_MAIZE Ensembl AGPv3 Genome Fasta File
GENOME_ZEA_MAYS_ENSEMBL_AGPV3 Ensembl AGPv3 Genome Fasta File
MAIZE Ensembl AGPv3 Main Directory
PICARD_MAIZE Ensembl AGPv3 Picard .dict File
PICARD_ZEA_MAYS_ENSEMBL_AGPV3 Ensembl AGPv3 Picard .dict File
ZEA_MAYS_ENSEMBL_AGPV3 Ensembl AGPv3 Main Directory

Attachments:

biodata_crane.xml (application/octet-stream)
biodata_crane_Arabidopsis_thaliana.xsl (application/octet-stream)
biodata_crane_Bacillus_cereus_ATCC_10987.xsl (application/octet-stream)
biodata_crane_Bacillus_subtilis_168.xsl (application/octet-stream)
biodata_crane_Bos_taurus.xsl (application/octet-stream)
biodata_crane_Caenorhabditis_elegans.xsl (application/octet-stream)
biodata_crane_Canis_familiaris.xsl (application/octet-stream)
biodata_crane_Danio_rerio.xsl (application/octet-stream)
biodata_crane_Drosophila_melanogaster.xsl (application/octet-stream)
biodata_crane_Enterobacteriophage_lambda.xsl (application/octet-stream)
biodata_crane_Equus_caballus.xsl (application/octet-stream)
biodata_crane_Escherichia_coli_K_12_DH10B.xsl (application/octet-stream)
biodata_crane_Escherichia_coli_K_12_MG1655.xsl (application/octet-stream)
biodata_crane_Gallus_gallus.xsl (application/octet-stream)
biodata_crane_Glycine_max.xsl (application/octet-stream)
biodata_crane_Homo_sapiens.xsl (application/octet-stream)
biodata_crane_Macaca_mulatta.xsl (application/octet-stream)
biodata_crane_Mus_musculus.xsl (application/octet-stream)
biodata_crane_Mycobacterium_tuberculosis_H37RV.xsl (application/octet-stream)
biodata_crane_Oryza_sativa_japonica.xsl (application/octet-stream)
biodata_crane_Pan_troglodytes.xsl (application/octet-stream)
biodata_crane_PhiX.xsl (application/octet-stream)
biodata_crane_Pseudomonas_aeruginosa_PAO1.xsl (application/octet-stream)
biodata_crane_Rattus_norvegicus.xsl (application/octet-stream)
biodata_crane_Saccharomyces_cerevisiae.xsl (application/octet-stream)
biodata_crane_Sorghum_bicolor.xsl (application/octet-stream)
biodata_crane_Staphylococcus_aureus_NCTC_8325.xsl (application/octet-stream)
biodata_crane_Sus_scrofa.xsl (application/octet-stream)
biodata_crane_Zea_mays.xsl (application/octet-stream)
biodata_crane.xml (text/xml)
biodata_crane.xml (text/xml)