Command Log: September 25, 2024, 10:34 am

clear
history
which enable_logging 
more ~/.command-history/enable_logging 
clear
more ~/.command-history/enable_logging 
clear
cp scripts/process/process_conditional.nf .
more process_conditional.nf 
clear
nextflow run process_conditional.nf -process.debug
more process_conditional.nf 
nextflow run --method bases process_conditional.nf -process.debug
clear
cp scripts/process/process_input_value.nf .
more process_input_value.nf 
nextflow run process_input_value.nf 
nextflow run process_input_value.nf -process.debug
ls
cp scripts/process/process_input_file.nf .
more process_input_file.nf 
nextflow run process_input_file.nf -process.debug
clear
more scripts/process/process_output_value.nf 
nextflow run scripts/process/process_output_value.nf 
cp scripts/process/process_output_value.nf .
more process_output_value.nf 
nextflow run process_output_value.nf 
more process_output_value.nf 
clear
more scripts/process/process_when.nf 
cp scripts/process/process_when.nf .
nextflow run process_when.nf -process.debug
clear
more scripts/process/process_directive.nf 
cp scripts/process/process_directive.nf .
nextflow run process_directive.nf -process.debug
more process_directive.nf 
more process_when.nf 
history
clear
more process_when.nf 
clear
more process_directive.nf 
nextflow run process_directive.nf -process.debug
more process_directive.nf 
clear
ls
ls work/
ls work/00
ls work/00/65eefd70a8998fdaeffeefa8830ee0/
ls f9/
ls /work/f9
ls /work/f9
ls
ls wor
ls work/
ls work/83/
ls work/83/c0babf6deefbfca93337e6c89cd118/
ls
clear
cp scripts/process/process_publishDir.nf .
more process_publishDir.nf 
nextflow run process_publishDir.nf 
ls
ls results/
ls results/merged_reads/
ls wor
ls work/
ls work/f9/
ls work/f9/ffa913bb6ac547dc9b18b5c1660cf3/
ls
more process_publishDir.nf 
ls -la results/merged_reads/ref1.merged.fq.gz 
rm -rf work/a3/
ls -la results/merged_reads/ref1.merged.fq.gz 
ls results/merged_reads/
clear
srun --qos=short --mem=5gb --time=03:00:00 --pty $SHELL
srun --qos=short --mem=5gb --time=03:00:00 --pty $SHELL
srun --qos=short --mem=5gb --time=05:00:00 --pty $SHELL