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Bioinformatics Tools

The following is a categorized list of bioinformatics tools available on HCC. Each page contains summary of the tool, information about the HCC resources that have the specific tool, links to user documentation, as well as example SLURM submit scripts.

More detailed information about submitting SLURM jobs and checking job status on HCC can be found here.

Alignment Tools

  • Description: How to use various alignment tools on HCC machines

Biodata Module

  • Description: How to use Biodata Module on HCC machines

Data Manipulation Tools

  • Description: How to use data manipulation tools on HCC machines

De Novo Assembly Tools

  • Description: How to use de novo assembly tools on HCC machines

Pre-processing Tools

  • Description: How to use pre-processing tools on HCC machines

QIIME

  • Description: How to run QIIME jobs on HCC machines

Reference-Based Assembly Tools

  • Description: How to use reference based assembly tools on HCC machines

Tools for Removing/Detecting Redundant Sequences

  • Description: How to use tools for removing/detecting redundant sequences on HCC machines