After logging into the cluster, load the requierd GIT module.
$ module load git/2.22
Download Cobra toolbox in your local $WORK directory by using the following command
$ git clone --depth=1 https://github.com/opencobra/cobratoolbox.git cobratoolbox
After the download been finished, a directory named “cobratoolbox” should be created in your WORK directory.
Enter the directory “cobratoolbox” using the following command
$ cd cobratoolbox
Then run the following command for uploading the required modules for cobratoolbox
$ git submodule update --init
Then run Matlab using the following command
Finally run the following command to test CobraToolbox using the following Matlab command
NOTE: you need to install CobraToolbox under your WORK directory NOT HOME directory. Because HOME directories are read-only from the compute nodes.